Hervé Pagès
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/DelayedArray |
| Branch: RELEASE_3_12 |
| Last Commit: 42c3398 |
| Last Changed Date: 2021-03-23 21:38:17 -0400 (Tue, 23 Mar 2021) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:39 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the DelayedArray package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 449/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DelayedArray 0.16.3 (landing page) Hervé Pagès
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: DelayedArray |
| Version: 0.16.3 |
| Command: rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.16.3.tar.gz |
| StartedAt: 2021-05-06 08:53:12 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 08:54:21 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 69.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DelayedArray_0.16.3.zip |
| PackageFileSize: 2.28 MiB |
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###
### Running command:
###
### rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.16.3.tar.gz
###
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install for i386
* installing *source* package 'DelayedArray' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c: In function 'C_encode_atomic_vector':
compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decode_atomic_vector':
compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_compress_atomic_vector':
compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decompress_atomic_vector':
compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sparseMatrix_utils.c -o sparseMatrix_utils.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/DelayedArray.buildbin-libdir/00LOCK-DelayedArray/00new/DelayedArray/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'rowsum' in package 'DelayedArray'
Creating a new generic function for 'aperm' in package 'DelayedArray'
Creating a generic function for 'sweep' from package 'base' in package 'DelayedArray'
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
** help
*** installing help indices
converting help for package 'DelayedArray'
finding HTML links ... done
Array-class html
ArrayGrid-class html
AutoBlock-global-settings html
AutoGrid html
DelayedArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-class.Rd:95: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-class.Rd:204: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-class.Rd:206: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
DelayedArray-stats html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-stats.Rd:90: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
DelayedArray-utils html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:83: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:103: file link 'Summary' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:118: file link 'is.na' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:118: file link '!' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:120: file link '%*%' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:135: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:138: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
DelayedMatrix-stats html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedMatrix-stats.Rd:79: file link 'rowSums' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedMatrix-stats.Rd:80: file link 'rowMaxs' in package 'matrixStats' does not exist and so has been treated as a topic
DelayedMatrix-utils html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/DelayedMatrix-utils.Rd:68: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
DelayedOp-class html
RleArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:37: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:40: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:51: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:52: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:52: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:77: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:77: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:78: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArray-class.Rd:89: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
RleArraySeed-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArraySeed-class.Rd:48: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArraySeed-class.Rd:51: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/RleArraySeed-class.Rd:58: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
SparseArraySeed-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/SparseArraySeed-class.Rd:77: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/SparseArraySeed-class.Rd:135: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
SparseArraySeed-utils html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/SparseArraySeed-utils.Rd:85: file link 'anyNA' in package 'base' does not exist and so has been treated as a topic
array_selection html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/array_selection.Rd:130: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/array_selection.Rd:189: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
bind-arrays html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/bind-arrays.Rd:40: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
blockApply html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/blockApply.Rd:102: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/blockApply.Rd:104: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/blockApply.Rd:106: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/blockApply.Rd:189: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/blockApply.Rd:190: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/blockApply.Rd:191: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
chunkGrid html
extract_array html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/extract_array.Rd:38: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/extract_array.Rd:95: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
makeCappedVolumeBox html
mapToGrid html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/mapToGrid.Rd:85: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
read_block html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/read_block.Rd:73: file link 'lgCMatrix-class' in package 'Matrix' does not exist and so has been treated as a topic
realize html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/realize.Rd:52: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
showtree html
simplify html
sparseMatrix-utils html
write_block html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:54: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:60: file link 'HDF5RealizationSink' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:122: file link 'HDF5RealizationSink' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:129: file link 'HDF5RealizationSink' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:140: file link 'HDF5RealizationSink' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:142: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:143: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:152: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:175: file link 'HDF5RealizationSink' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:233: file link 'HDF5RealizationSink' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeGvwKt/R.INSTALL15081f75798b/DelayedArray/man/write_block.Rd:236: file link 'HDF5-dump-management' in package 'HDF5Array' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DelayedArray' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c: In function 'C_encode_atomic_vector':
compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decode_atomic_vector':
compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_compress_atomic_vector':
compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decompress_atomic_vector':
compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sparseMatrix_utils.c -o sparseMatrix_utils.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedArray' as DelayedArray_0.16.3.zip
* DONE (DelayedArray)