Pacome Prompsy
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/ChromSCape |
| Branch: RELEASE_3_12 |
| Last Commit: c84df0d |
| Last Changed Date: 2020-10-27 12:02:02 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:14 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the ChromSCape package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 298/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChromSCape 1.0.0 (landing page) Pacome Prompsy
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ChromSCape |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/ChromSCape_1.0.0.tar.gz && rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChromSCape.buildbin-libdir ChromSCape_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ChromSCape_1.0.0.zip && rm ChromSCape_1.0.0.tar.gz ChromSCape_1.0.0.zip |
| StartedAt: 2021-05-05 18:38:42 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:40:51 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 128.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/ChromSCape_1.0.0.tar.gz && rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChromSCape.buildbin-libdir ChromSCape_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ChromSCape_1.0.0.zip && rm ChromSCape_1.0.0.tar.gz ChromSCape_1.0.0.zip
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install for i386
* installing *source* package 'ChromSCape' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ChromSCape'
finding HTML links ... done
CompareWilcox html
CompareedgeRGLM html
DA_one_vs_rest_fun html
DA_pairwise html
H1proportion html
annotToCol2 html
annotation_from_merged_peaks html
anocol_binary html
anocol_categorical html
bams_to_matrix_indexes html
beds_to_matrix_indexes html
call_macs2_merge_peaks html
changeRange html
check_correct_datamatrix html
choose_cluster_scExp html
choose_perplexity html
col2hex html
colors_scExp html
combine_datamatrix html
combine_enrichmentTests html
consensus_clustering_scExp html
correlation_and_hierarchical_clust_scExp
html
create_sample_name_mat html
create_scDataset_raw html
create_scExp html
define_feature html
detect_samples html
differential_analysis_scExp html
distPearson html
enrichmentTest html
exclude_features_scExp html
feature_annotation_scExp html
filter_correlated_cell_scExp html
filter_genes_with_refined_peak_annotation
html
filter_scExp html
gene_set_enrichment_analysis_scExp html
generate_count_matrix html
generate_feature_names html
get_color_dataframe_from_input html
get_genomic_coordinates html
gg_fill_hue html
groupMat html
has_genomic_coordinates html
hclustAnnotHeatmapPlot html
hg38.GeneTSS html
hg38.chromosomes html
imageCol html
import_count_input_files html
import_scExp html
index_peaks_barcodes_to_matrix_indexes
html
launchApp html
load_MSIGdb html
merge_MACS2_peaks html
mm10.GeneTSS html
mm10.chromosomes html
normalize_scExp html
num_cell_after_QC_filt_scExp html
num_cell_after_cor_filt_scExp html
num_cell_before_cor_filt_scExp html
num_cell_in_cluster_scExp html
num_cell_scExp html
pca_irlba_for_sparseMatrix html
peaks_to_bins html
plot_cluster_consensus_scExp html
plot_differential_H1_scExp html
plot_differential_summary_scExp html
plot_differential_volcano_scExp html
plot_distribution_scExp html
plot_heatmap_scExp html
plot_reduced_dim_scExp html
preprocess_CPM html
preprocess_RPKM html
preprocess_TPM html
preprocess_feature_size_only html
raw_counts_to_feature_count_files html
read_count_mat_with_separated_chr_start_end
html
reduce_dim_batch_correction html
reduce_dims_scExp html
remove_chr_M_fun html
remove_non_canonical_fun html
results_enrichmentTest html
run_pairwise_tests html
run_tsne_scExp html
scExp html
separate_BAM_into_clusters html
separator_count_mat html
subsample_scExp html
subset_bam_call_peaks html
table_enriched_genes_scExp html
warning_DA html
warning_filter_correlated_cell_scExp html
warning_plot_reduced_dim_scExp html
warning_raw_counts_to_feature_count_files
html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ChromSCape' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChromSCape' as ChromSCape_1.0.0.zip
* DONE (ChromSCape)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'ChromSCape' successfully unpacked and MD5 sums checked