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BUILD BIN report for ChIPanalyser on tokay1

This page was generated on 2020-08-11 11:45:43 -0400 (Tue, 11 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ChIPanalyser PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 270/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPanalyser 1.11.0
Patrick C.N. Martin
Snapshot Date: 2020-08-10 14:50:56 -0400 (Mon, 10 Aug 2020)
URL: https://git.bioconductor.org/packages/ChIPanalyser
Branch: master
Last Commit: e6bd584
Last Changed Date: 2020-04-27 15:09:59 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ChIPanalyser
Version: 1.11.0
Command: rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.11.0.tar.gz
StartedAt: 2020-08-11 08:28:24 -0400 (Tue, 11 Aug 2020)
EndedAt: 2020-08-11 08:29:16 -0400 (Tue, 11 Aug 2020)
EllapsedTime: 51.6 seconds
RetCode: 0
Status:  OK  
PackageFile: ChIPanalyser_1.11.0.zip
PackageFileSize: 1.391 MiB

Command output

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###
### Running command:
###
###   rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.11.0.tar.gz
###
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install for i386

* installing *source* package 'ChIPanalyser' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'drop' in package 'ChIPanalyser'
** help
*** installing help indices
  converting help for package 'ChIPanalyser'
    finding HTML links ... done
    BPFrequency-methods                     html  
    BPFrequency                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/BPFrequency.Rd:33: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/BPFrequency.Rd:35: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    BPFrequency_--methods                   html  
    BPFrequency_-                           html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/BPFrequency_-.Rd:41: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/BPFrequency_-.Rd:59: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/BPFrequency_-.Rd:60: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    ChIPScore-class                         html  
    ChIPanalyser-package                    html  
    DNASequenceLength-methods               html  
    DNASequenceLength                       html  
    GRList-class                            html  
    PFMFormat-methods                       html  
    PFMFormat                               html  
    PFMFormat_--methods                     html  
    PFMFormat_                              html  
    PWMThreshold-methods                    html  
    PWMThreshold                            html  
    PWMThreshold_--methods                  html  
    PWMThreshold_-                          html  
    PWMpseudocount-methods                  html  
    PWMpseudocount                          html  
    PWMpseudocount_--methods                html  
    PWMpseudocount_-                        html  
    PositionFrequencyMatrix-methods         html  
    PositionFrequencyMatrix                 html  
    PositionFrequencyMatrix_--methods       html  
    PositionFrequencyMatrix_-               html  
    PositionWeightMatrix-methods            html  
    PositionWeightMatrix                    html  
    PositionWeightMatrix_--methods          html  
    PositionWeightMatrix_-                  html  
    averageExpPWMScore-methods              html  
    averageExpPWMScore                      html  
    backgroundSignal-methods                html  
    backgroundSignal                        html  
    backgroundSignal_--methods              html  
    backgroundSignal_-                      html  
    boundMolecules-methods                  html  
    boundMolecules                          html  
    boundMolecules_--methods                html  
    boundMolecules_-                        html  
    chipMean-methods                        html  
    chipMean                                html  
    chipMean_--methods                      html  
    chipMean_-                              html  
    chipSd-methods                          html  
    chipSd                                  html  
    chipSd_--methods                        html  
    chipSd_-                                html  
    chipSmooth-methods                      html  
    chipSmooth                              html  
    chipSmooth_--methods                    html  
    chipSmooth_-                            html  
    computeChIPProfile                      html  
    finding level-2 HTML links ... done

    computeGenomeWideScores                 html  
    computeOccupancy                        html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computeOccupancy.Rd:66: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computeOccupancy.Rd:68: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeOptimal                          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computeOptimal.Rd:29: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computeOptimal.Rd:42: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computePWMScore                         html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computePWMScore.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computePWMScore.Rd:38: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computePWMScore.Rd:64: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/computePWMScore.Rd:65: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    data                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/data.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/data.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/data.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    drop-methods                            html  
    drop                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/drop.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    genomicProfiles-class                   html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/genomicProfiles-class.Rd:29: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    genomicProfiles                         html  
    genomicProfilesInternal-class           html  
    initialize-methods                      html  
    lambdaPWM-methods                       html  
    lambdaPWM                               html  
    lambdaPWM_--methods                     html  
    lambdaPWM_                              html  
    loci-class                              html  
    loci-methods                            html  
    loci                                    html  
    lociWidth-methods                       html  
    lociWidth                               html  
    lociWidth_--methods                     html  
    lociWidth_                              html  
    maxPWMScore-methods                     html  
    maxPWMScore                             html  
    maxSignal-methods                       html  
    maxSignal                               html  
    maxSignal_--methods                     html  
    maxSignal_-                             html  
    minPWMScore-methods                     html  
    minPWMScore                             html  
    naturalLog-methods                      html  
    naturalLog                              html  
    naturalLog_--methods                    html  
    naturalLog_-                            html  
    noOfSites-methods                       html  
    noOfSites                               html  
    noOfSites_--methods                     html  
    noOfSites_-                             html  
    noiseFilter-methods                     html  
    noiseFilter                             html  
    noiseFilter_--methods                   html  
    noiseFilter_                            html  
    nos-class                               html  
    parameterOptions-class                  html  
    parameterOptions                        html  
    ploidy-methods                          html  
    ploidy                                  html  
    ploidy_--methods                        html  
    ploidy_-                                html  
    plotOccupancyProfile                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/plotOccupancyProfile.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/plotOccupancyProfile.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/plotOccupancyProfile.Rd:34: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/plotOccupancyProfile.Rd:47: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    plotOptimalHeatMaps                     html  
    processingChIP                          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/processingChIP.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpmk8hVV/R.INSTALL25c054903292/ChIPanalyser/man/processingChIP.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    profileAccuracyEstimate                 html  
    profiles-methods                        html  
    removeBackground-methods                html  
    removeBackground                        html  
    removeBackground_--methods              html  
    removeBackground_-                      html  
    scores-methods                          html  
    scores                                  html  
    searchSites                             html  
    show-methods                            html  
    stepSize-methods                        html  
    stepSize                                html  
    stepSize_--methods                      html  
    stepSize_-                              html  
    strandRule-methods                      html  
    strandRule                              html  
    strandRule_--methods                    html  
    strandRule_-                            html  
    whichstrand-methods                     html  
    whichstrand                             html  
    whichstrand_--methods                   html  
    whichstrand_-                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChIPanalyser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPanalyser' as ChIPanalyser_1.11.0.zip
* DONE (ChIPanalyser)