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INSTALL report for CellNOptR on malbec1

This page was generated on 2020-08-07 11:18:27 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CellNOptR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 245/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellNOptR 1.35.0
A.Gabor
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/CellNOptR
Branch: master
Last Commit: 124d322
Last Changed Date: 2020-04-27 14:27:42 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: CellNOptR
Version: 1.35.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL CellNOptR
StartedAt: 2020-08-06 16:30:25 -0400 (Thu, 06 Aug 2020)
EndedAt: 2020-08-06 16:30:41 -0400 (Thu, 06 Aug 2020)
EllapsedTime: 16.7 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL CellNOptR
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘CellNOptR’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I./include  -fpic  -g -O2  -Wall -c getFit.c -o getFit.o
getFit.c: In function ‘getFit’:
getFit.c:47:6: warning: unused variable ‘nReacs’ [-Wunused-variable]
  int nReacs = INTEGER(nReacs_in)[0];
      ^~~~~~
getFit.c:42:6: warning: unused variable ‘selCounter’ [-Wunused-variable]
  int selCounter = 0;
      ^~~~~~~~~~
getFit.c:41:6: warning: unused variable ‘selection’ [-Wunused-variable]
  int selection[40];
      ^~~~~~~~~
getFit.c:40:6: warning: unused variable ‘or_max’ [-Wunused-variable]
  int or_max = 0;
      ^~~~~~
getFit.c:39:6: warning: unused variable ‘curr_max’ [-Wunused-variable]
  int curr_max = 0;
      ^~~~~~~~
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I./include  -fpic  -g -O2  -Wall -c simulatorT1.c -o simulatorT1.o
simulatorT1.c: In function ‘simulatorT1’:
simulatorT1.c:502:20: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
        if (MA[i][j]<0.95 & MA[i][j]>0.05)  // actually we could check if they are exatly 0 or 1
            ~~~~~~~~^~~~~
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I./include  -fpic  -g -O2  -Wall -c simulatorTN.c -o simulatorTN.o
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o CellNOptR.so getFit.o simulatorT1.o simulatorTN.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellNOptR)