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BUILD BIN report for CGHbase on tokay1

This page was generated on 2020-08-07 11:58:14 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CGHbase PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 256/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CGHbase 1.49.0
Mark van de Wiel
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/CGHbase
Branch: master
Last Commit: a77a421
Last Changed Date: 2020-04-27 14:17:17 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CGHbase
Version: 1.49.0
Command: rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CGHbase.buildbin-libdir CGHbase_1.49.0.tar.gz
StartedAt: 2020-08-07 07:03:29 -0400 (Fri, 07 Aug 2020)
EndedAt: 2020-08-07 07:04:06 -0400 (Fri, 07 Aug 2020)
EllapsedTime: 37.5 seconds
RetCode: 0
Status:  OK  
PackageFile: CGHbase_1.49.0.zip
PackageFileSize: 1.062 MiB

Command output

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###
### Running command:
###
###   rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CGHbase.buildbin-libdir CGHbase_1.49.0.tar.gz
###
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install for i386

* installing *source* package 'CGHbase' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CGHbase'
    finding HTML links ... done
    CGHbase-package                         html  
    Wilting                                 html  
    WiltingCalled                           html  
    WiltingNorm                             html  
    WiltingRaw                              html  
    WiltingRegions                          html  
    WiltingSeg                              html  
    avedist                                 html  
    chromosomes                             html  
    class.cghCall                           html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:42: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:56: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:95: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:96: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:97: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:100: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:101: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:137: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghCall.Rd:143: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    class.cghRaw                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:25: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:30: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:62: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:63: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:64: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:67: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:68: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:82: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghRaw.Rd:88: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    class.cghRegions                        html  
    class.cghSeg                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:27: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:33: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:60: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:61: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:62: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:65: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:66: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:85: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpcTy5bR/R.INSTALLc30443f6176/CGHbase/man/class.cghSeg.Rd:91: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
    copynumber                              html  
    frequencyPlot                           html  
    frequencyPlotCalls                      html  
    make_cghRaw                             html  
    plot                                    html  
    probloss                                html  
    regions                                 html  
    summaryPlot                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CGHbase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CGHbase' as CGHbase_1.49.0.zip
* DONE (CGHbase)