Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for BufferedMatrixMethods on malbec1

This page was generated on 2020-08-10 11:33:02 -0400 (Mon, 10 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BufferedMatrixMethods PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 206/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.53.0
Ben Bolstad
Snapshot Date: 2020-08-09 14:51:29 -0400 (Sun, 09 Aug 2020)
URL: https://git.bioconductor.org/packages/BufferedMatrixMethods
Branch: master
Last Commit: d7d095f
Last Changed Date: 2020-04-27 14:14:37 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BufferedMatrixMethods
Version: 1.53.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL BufferedMatrixMethods
StartedAt: 2020-08-09 16:04:13 -0400 (Sun, 09 Aug 2020)
EndedAt: 2020-08-09 16:04:18 -0400 (Sun, 09 Aug 2020)
EllapsedTime: 4.6 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL BufferedMatrixMethods
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘BufferedMatrixMethods’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/BufferedMatrix/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c init_package.c -o init_package.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/BufferedMatrix/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:344:7: warning: unused variable ‘i’ [-Wunused-variable]
   int i,j;
       ^
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:378:7: warning: unused variable ‘current_mode’ [-Wunused-variable]
   int current_mode;
       ^~~~~~~~~~~~
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:593:7: warning: unused variable ‘current_mode’ [-Wunused-variable]
   int current_mode;
       ^~~~~~~~~~~~
preprocess_bm.c: In function ‘do_RMA_buffmat’:
preprocess_bm.c:924:7: warning: variable ‘first_ind’ set but not used [-Wunused-but-set-variable]
   int first_ind;
       ^~~~~~~~~
preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’:
preprocess_bm.c:1151:7: warning: unused variable ‘current_mode’ [-Wunused-variable]
   int current_mode;
       ^~~~~~~~~~~~
At top level:
preprocess_bm.c:453:12: warning: ‘min’ defined but not used [-Wunused-function]
 static int min(int x1,int x2){
            ^~~
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BufferedMatrixMethods)