Bioconductor Package Maintainer
| Snapshot Date: 2021-01-18 14:42:24 -0500 (Mon, 18 Jan 2021) |
| URL: https://git.bioconductor.org/packages/BiocIO |
| Branch: RELEASE_3_12 |
| Last Commit: 724abe7 |
| Last Changed Date: 2020-11-09 08:42:03 -0500 (Mon, 09 Nov 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-01-19 11:54:49 -0500 (Tue, 19 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE BiocIO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 162/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocIO 1.0.1 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||
| nebbiolo1 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: BiocIO |
| Version: 1.0.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BiocIO_1.0.1.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.0.1.zip && rm BiocIO_1.0.1.tar.gz BiocIO_1.0.1.zip |
| StartedAt: 2021-01-18 18:36:37 -0500 (Mon, 18 Jan 2021) |
| EndedAt: 2021-01-18 18:37:01 -0500 (Mon, 18 Jan 2021) |
| EllapsedTime: 24.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BiocIO_1.0.1.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.0.1.zip && rm BiocIO_1.0.1.tar.gz BiocIO_1.0.1.zip
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install for i386
* installing *source* package 'BiocIO' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiocIO'
finding HTML links ... done
BiocFile-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/BiocFile-class.Rd:146: file link 'TwoBitFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/BiocFile-class.Rd:146: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/BiocFile-class.Rd:147: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/BiocFile-class.Rd:147: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
export html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/export.Rd:59: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/export.Rd:60: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/export.Rd:61: file link 'BED15File' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/export.Rd:62: file link 'BEDGraphFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2321yP/R.INSTALL1fd87a15be2/BiocIO/man/export.Rd:63: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BiocIO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocIO' as BiocIO_1.0.1.zip
* DONE (BiocIO)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BiocIO' successfully unpacked and MD5 sums checked