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CHECK report for BiocDockerManager on tokay1

This page was generated on 2020-08-07 12:20:11 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BiocDockerManager PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 150/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocDockerManager 1.1.2
Maintainer
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/BiocDockerManager
Branch: master
Last Commit: c1c99f1
Last Changed Date: 2020-07-01 11:30:36 -0400 (Wed, 01 Jul 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocDockerManager
Version: 1.1.2
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BiocDockerManager.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BiocDockerManager_1.1.2.tar.gz
StartedAt: 2020-08-07 06:15:44 -0400 (Fri, 07 Aug 2020)
EndedAt: 2020-08-07 06:18:37 -0400 (Fri, 07 Aug 2020)
EllapsedTime: 173.0 seconds
RetCode: 0
Status:  OK  
CheckDir: BiocDockerManager.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BiocDockerManager.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BiocDockerManager_1.1.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/BiocDockerManager.Rcheck'
* using R version 4.0.2 (2020-06-22)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocDockerManager/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BiocDockerManager' version '1.1.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocDockerManager' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
available 1.66   0.03   23.38
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
available 1.92   0.09    22.4
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

BiocDockerManager.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BiocDockerManager_1.1.2.tar.gz && rm -rf BiocDockerManager.buildbin-libdir && mkdir BiocDockerManager.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocDockerManager.buildbin-libdir BiocDockerManager_1.1.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiocDockerManager_1.1.2.zip && rm BiocDockerManager_1.1.2.tar.gz BiocDockerManager_1.1.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 13274  100 13274    0     0   333k      0 --:--:-- --:--:-- --:--:--  370k

install for i386

* installing *source* package 'BiocDockerManager' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocDockerManager'
    finding HTML links ... done
    BiocDockerManager                       html  
    available                               html  
    help                                    html  
    install                                 html  
    installed                               html  
    maintainer                              html  
    use_dockerfile                          html  
    valid                                   html  
    version                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiocDockerManager' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocDockerManager' as BiocDockerManager_1.1.2.zip
* DONE (BiocDockerManager)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BiocDockerManager' successfully unpacked and MD5 sums checked

Tests output

BiocDockerManager.Rcheck/tests_i386/testthat.Rout


R version 4.0.2 (2020-06-22) -- "Taking Off Again"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(BiocDockerManager)

Attaching package: 'BiocDockerManager'

The following objects are masked from 'package:utils':

    help, maintainer

> 
> test_check("BiocDockerManager")
== testthat results  ===========================================================
[ OK: 23 | SKIPPED: 9 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
   3.28    0.18   27.93 

BiocDockerManager.Rcheck/tests_x64/testthat.Rout


R version 4.0.2 (2020-06-22) -- "Taking Off Again"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(BiocDockerManager)

Attaching package: 'BiocDockerManager'

The following objects are masked from 'package:utils':

    help, maintainer

> 
> test_check("BiocDockerManager")
== testthat results  ===========================================================
[ OK: 23 | SKIPPED: 9 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
   4.54    0.28   24.92 

Example timings

BiocDockerManager.Rcheck/examples_i386/BiocDockerManager-Ex.timings

nameusersystemelapsed
available 1.66 0.0323.38
help0.000.010.03
install0.000.020.01
installed000
maintainer0.020.000.02
use_dockerfile0.010.000.01
valid000
version0.000.010.02

BiocDockerManager.Rcheck/examples_x64/BiocDockerManager-Ex.timings

nameusersystemelapsed
available 1.92 0.0922.40
help0.010.020.03
install000
installed000
maintainer000
use_dockerfile0.030.000.04
valid000
version000