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INSTALL report for BioNet on tokay1

This page was generated on 2020-08-06 11:52:39 -0400 (Thu, 06 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BioNet PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 172/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioNet 1.49.1
Marcus Dittrich
Snapshot Date: 2020-08-05 14:50:59 -0400 (Wed, 05 Aug 2020)
URL: https://git.bioconductor.org/packages/BioNet
Branch: master
Last Commit: e5ed9b6
Last Changed Date: 2020-06-08 09:59:21 -0400 (Mon, 08 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: BioNet
Version: 1.49.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BioNet_1.49.1.tar.gz && rm -rf BioNet.buildbin-libdir && mkdir BioNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioNet.buildbin-libdir BioNet_1.49.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BioNet_1.49.1.zip && rm BioNet_1.49.1.tar.gz BioNet_1.49.1.zip
StartedAt: 2020-08-05 17:48:45 -0400 (Wed, 05 Aug 2020)
EndedAt: 2020-08-05 17:49:50 -0400 (Wed, 05 Aug 2020)
EllapsedTime: 65.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BioNet_1.49.1.tar.gz && rm -rf BioNet.buildbin-libdir && mkdir BioNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioNet.buildbin-libdir BioNet_1.49.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BioNet_1.49.1.zip && rm BioNet_1.49.1.tar.gz BioNet_1.49.1.zip
###
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install for i386

* installing *source* package 'BioNet' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BioNet'
    finding HTML links ... done
    BioNet-package                          html  
    aggrPvals                               html  
    bumOptim                                html  
    compareNetworks                         html  
    consensusScores                         html  
    fbum                                    html  
    fbumLL                                  html  
    fdrThreshold                            html  
    fitBumModel                             html  
    getCompScores                           html  
    getEdgeList                             html  
    hist.bum                                html  
    largestComp                             html  
    largestScoreComp                        html  
    loadNetwork.sif                         html  
    loadNetwork.tab                         html  
    makeNetwork                             html  
    mapByVar                                html  
    permutateNodes                          html  
    piUpper                                 html  
    plot.bum                                html  
    plot3dModule                            html  
    plotLLSurface                           html  
    plotModule                              html  
    print.bum                               html  
    pvaluesExample                          html  
    readHeinzGraph                          html  
    readHeinzTree                           html  
    resamplingPvalues                       html  
    rmSelfLoops                             html  
    runFastHeinz                            html  
    runHeinz                                html  
    save3dModule                            html  
    saveNetwork                             html  
    scanFDR                                 html  
    scoreFunction                           html  
    scoreNodes                              html  
    scoreOffset                             html  
    sortedEdgeList                          html  
    subNetwork                              html  
    summary.bum                             html  
    writeHeinz                              html  
    writeHeinzEdges                         html  
    writeHeinzNodes                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'BioNet' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'BioNet' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BioNet' ...
** testing if installed package can be loaded
Warning: Package 'BioNet' is deprecated and will be removed from Bioconductor
  version 3.13
* MD5 sums
packaged installation of 'BioNet' as BioNet_1.49.1.zip
* DONE (BioNet)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BioNet' successfully unpacked and MD5 sums checked