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BUILD report for BioNet on merida1

This page was generated on 2020-09-20 10:21:11 -0400 (Sun, 20 Sep 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BioNet PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 174/1912HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioNet 1.49.1
Marcus Dittrich
Snapshot Date: 2020-09-19 14:40:23 -0400 (Sat, 19 Sep 2020)
URL: https://git.bioconductor.org/packages/BioNet
Branch: master
Last Commit: e5ed9b6
Last Changed Date: 2020-06-08 09:59:21 -0400 (Mon, 08 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
riesling1 Windows Server 2019 Standard / x64  OK  ERROR  skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: BioNet
Version: 1.49.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioNet
StartedAt: 2020-09-19 18:23:24 -0400 (Sat, 19 Sep 2020)
EndedAt: 2020-09-19 18:24:24 -0400 (Sat, 19 Sep 2020)
EllapsedTime: 59.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioNet
###
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* checking for file ‘BioNet/DESCRIPTION’ ... OK
* preparing ‘BioNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Tutorial.Rnw’ using Sweave
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, append, as.data.frame, basename,
    cbind, colnames, dirname, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max,
    which.min

Loading required package: RBGL
Warning: Package 'BioNet' is deprecated and will be removed
  from Bioconductor version 3.13
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Warning in readHeinzGraph(node.file = file.path(datadir, "lymphoma_nodes_001.txt.0.hnz"),  :
  In at least one result no module found

Error: processing vignette 'Tutorial.Rnw' failed with diagnostics:
 chunk 24 
Error in names(al) <- name : 
  'names' attribute [2] must be the same length as the vector [0]

--- failed re-building ‘Tutorial.Rnw’

SUMMARY: processing the following file failed:
  ‘Tutorial.Rnw’

Error: Vignette re-building failed.
Execution halted