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BUILD BIN report for BeadDataPackR on merida1

This page was generated on 2021-02-22 12:41:55 -0500 (Mon, 22 Feb 2021).

To the developers/maintainers of the BeadDataPackR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 136/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BeadDataPackR 1.42.0
Mike Smith
Snapshot Date: 2021-02-21 14:52:07 -0500 (Sun, 21 Feb 2021)
URL: https://git.bioconductor.org/packages/BeadDataPackR
Branch: RELEASE_3_12
Last Commit: 95371b9
Last Changed Date: 2020-10-27 10:37:45 -0500 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: BeadDataPackR
Version: 1.42.0
Command: rm -rf BeadDataPackR.buildbin-libdir && mkdir BeadDataPackR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BeadDataPackR_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BeadDataPackR.buildbin-libdir
StartedAt: 2021-02-22 07:58:52 -0500 (Mon, 22 Feb 2021)
EndedAt: 2021-02-22 08:00:00 -0500 (Mon, 22 Feb 2021)
EllapsedTime: 68.7 seconds
RetCode: 0
Status:   OK  
PackageFile: BeadDataPackR_1.42.0.tgz
PackageFileSize: 276.1 KiB

Command output

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### Running command:
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###   rm -rf BeadDataPackR.buildbin-libdir && mkdir BeadDataPackR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BeadDataPackR_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BeadDataPackR.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BeadDataPackR.buildbin-libdir BeadDataPackR_1.42.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BeadDataPackR’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c BeadDataPackR.c -o BeadDataPackR.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_BeadDataPackR.c -o R_init_BeadDataPackR.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BeadDataPackR.so BeadDataPackR.o R_init_BeadDataPackR.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/BeadDataPackR.buildbin-libdir/00LOCK-BeadDataPackR/00new/BeadDataPackR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BeadDataPackR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BeadDataPackR.buildbin-libdir/BeadDataPackR/libs/BeadDataPackR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "BeadDataPackR.buildbin-libdir/BeadDataPackR/libs/BeadDataPackR.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BeadDataPackR.buildbin-libdir/BeadDataPackR/libs/BeadDataPackR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BeadDataPackR.buildbin-libdir/BeadDataPackR/libs/BeadDataPackR.so"