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INSTALL report for BASiCS on riesling1

This page was generated on 2020-10-23 11:07:55 -0400 (Fri, 23 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BASiCS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 116/1952HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BASiCS 2.1.16
Catalina Vallejos
Snapshot Date: 2020-10-22 14:43:18 -0400 (Thu, 22 Oct 2020)
URL: https://git.bioconductor.org/packages/BASiCS
Branch: master
Last Commit: effdd00
Last Changed Date: 2020-10-22 09:34:41 -0400 (Thu, 22 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK YES, new version is higher than in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  OK  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: BASiCS
Version: 2.1.16
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BASiCS_2.1.16.tar.gz && rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BASiCS.buildbin-libdir BASiCS_2.1.16.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BASiCS_2.1.16.zip && rm BASiCS_2.1.16.tar.gz BASiCS_2.1.16.zip
StartedAt: 2020-10-22 16:56:53 -0400 (Thu, 22 Oct 2020)
EndedAt: 2020-10-22 16:58:17 -0400 (Thu, 22 Oct 2020)
EllapsedTime: 83.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BASiCS_2.1.16.tar.gz && rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BASiCS.buildbin-libdir BASiCS_2.1.16.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BASiCS_2.1.16.zip && rm BASiCS_2.1.16.tar.gz BASiCS_2.1.16.zip
###
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100 2420k  100 2420k    0     0   9.9M      0 --:--:-- --:--:-- --:--:--  9.9M

install for i386

* installing *source* package 'BASiCS' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c BASiCS.cpp -o BASiCS.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BASiCS.dll tmp.def BASiCS.o RcppExports.o -LD:/biocbuild/bbs-3.12-bioc/R/bin/i386 -lRlapack -LD:/biocbuild/bbs-3.12-bioc/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.12-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.12-bioc/meat/BASiCS.buildbin-libdir/00LOCK-BASiCS/00new/BASiCS/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BASiCS'
    finding HTML links ... done
    BASiCS-defunct                          html  
    BASiCS_Chain-methods                    html  
    BASiCS_Chain                            html  
    BASiCS_CorrectOffset                    html  
    BASiCS_DenoisedCounts                   html  
    finding level-2 HTML links ... done

    BASiCS_DenoisedRates                    html  
    BASiCS_DetectVG                         html  
    BASiCS_DiagHist                         html  
    BASiCS_DiagPlot                         html  
    BASiCS_DivideAndConquer                 html  
    BASiCS_Draw                             html  
    BASiCS_EffectiveSize                    html  
    BASiCS_Filter                           html  
    BASiCS_LoadChain                        html  
    BASiCS_MCMC                             html  
    BASiCS_MockSCE                          html  
    BASiCS_PlotDE                           html  
    BASiCS_PlotOffset                       html  
    BASiCS_PlotVG                           html  
    BASiCS_PriorParam                       html  
    BASiCS_Result                           html  
    BASiCS_ResultDE                         html  
    BASiCS_ResultVG                         html  
    BASiCS_ResultsDE                        html  
    BASiCS_ShowFit                          html  
    BASiCS_Sim                              html  
    BASiCS_Summary-methods                  html  
    BASiCS_Summary                          html  
    BASiCS_TestDE                           html  
    BASiCS_VarThresholdSearchHVG_LVG        html  
    BASiCS_VarianceDecomp                   html  
    ChainRNA                                html  
    ChainRNAReg                             html  
    ChainSC                                 html  
    ChainSCReg                              html  
    Summary-BASiCS_Chain-method             html  
    as.data.frame-methods                   html  
    dim-BASiCS_Chain-method                 html  
    dimnames-BASiCS_Chain-method            html  
    displayChainBASiCS-BASiCS_Chain-method
                                            html  
    displaySummaryBASiCS-BASiCS_Summary-method
                                            html  
    dot-generateSubsets                     html  
    format-methods                          html  
    makeExampleBASiCS_Data                  html  
    newBASiCS_Chain                         html  
    newBASiCS_Data                          html  
    plot-BASiCS_Chain-method                html  
    plot-BASiCS_Summary-method              html  
    rowData                                 html  
    show-BASiCS_ResultDE-method             html  
    show-BASiCS_ResultVG-method             html  
    show-BASiCS_ResultsDE-method            html  
    subset-BASiCS_Chain-method              html  
    subset-methods                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BASiCS' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c BASiCS.cpp -o BASiCS.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BASiCS.dll tmp.def BASiCS.o RcppExports.o -LD:/biocbuild/bbs-3.12-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.12-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.12-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.12-bioc/meat/BASiCS.buildbin-libdir/BASiCS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BASiCS' as BASiCS_2.1.16.zip
* DONE (BASiCS)
* installing to library 'D:/biocbuild/bbs-3.12-bioc/R/library'
package 'BASiCS' successfully unpacked and MD5 sums checked