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BUILD report for AnnotationForge on nebbiolo1

This page was generated on 2020-09-19 10:16:47 -0400 (Sat, 19 Sep 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE AnnotationForge PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 61/1912HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationForge 1.31.2
Bioconductor Package Maintainer
Snapshot Date: 2020-09-18 14:43:25 -0400 (Fri, 18 Sep 2020)
URL: https://git.bioconductor.org/packages/AnnotationForge
Branch: master
Last Commit: 7382b9a
Last Changed Date: 2020-06-01 17:00:58 -0400 (Mon, 01 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: AnnotationForge
Version: 1.31.2
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
StartedAt: 2020-09-18 17:59:12 -0400 (Fri, 18 Sep 2020)
EndedAt: 2020-09-18 18:01:22 -0400 (Fri, 18 Sep 2020)
EllapsedTime: 129.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
###
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* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr
Quitting from lines 196-202 (MakingNewAnnotationPackages.Rnw) 
Error: processing vignette 'MakingNewAnnotationPackages.Rnw' failed with diagnostics:
cannot open the connection to 'http://www.uniprot.org/uniprot/?query=P13368+or+Q6GZX4&format=tab'
--- failed re-building ‘MakingNewAnnotationPackages.Rnw’

--- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr
--- finished re-building ‘MakingNewOrganismPackages.Rmd’

--- re-building ‘SQLForge.Rnw’ using knitr
--- finished re-building ‘SQLForge.Rnw’

--- re-building ‘makeProbePackage.Rnw’ using knitr
Warning: call dbDisconnect() when finished working with a connection

See
  ‘/tmp/Rtmpu8LzAt/hgu95av2probe.Rcheck/00check.log’
for details.


Warning in UseMethod("as.list") :
  closing unused connection 5 (/tmp/RtmpeahprK/Rinst283587bc6f3ed/AnnotationForge/extdata/HG-U95Av2_probe_tab.gz)
--- finished re-building ‘makeProbePackage.Rnw’

SUMMARY: processing the following file failed:
  ‘MakingNewAnnotationPackages.Rnw’

Error: Vignette re-building failed.
Execution halted