Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-01-19 11:56:56 -0500 (Tue, 19 Jan 2021).
TO THE DEVELOPERS/MAINTAINERS OF THE ASEB PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 91/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ASEB 1.34.0 Likun Wang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
nebbiolo1 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK | ![]() |
Package: ASEB |
Version: 1.34.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASEB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASEB_1.34.0.tar.gz |
StartedAt: 2021-01-18 23:26:09 -0500 (Mon, 18 Jan 2021) |
EndedAt: 2021-01-18 23:26:46 -0500 (Mon, 18 Jan 2021) |
EllapsedTime: 37.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ASEB.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASEB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASEB_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/ASEB.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ASEB/DESCRIPTION’ ... OK * this is package ‘ASEB’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ASEB’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE SequenceInfo: no visible global function definition for ‘new’ drawEScurve,data.frame: no visible global function definition for ‘pdf’ drawEScurve,data.frame: no visible global function definition for ‘jpeg’ drawEScurve,data.frame: no visible global function definition for ‘lines’ drawEScurve,data.frame: no visible global function definition for ‘rgb’ drawEScurve,data.frame: no visible global function definition for ‘dev.off’ drawStat,data.frame: no visible global function definition for ‘pdf’ drawStat,data.frame: no visible global function definition for ‘jpeg’ drawStat,data.frame: no visible global function definition for ‘lines’ drawStat,data.frame: no visible global function definition for ‘dev.off’ ids,SequenceInfo: no visible global function definition for ‘slot’ ids<-,SequenceInfo-character: no visible global function definition for ‘slot<-’ sequences,SequenceInfo: no visible global function definition for ‘slot’ sequences<-,SequenceInfo-character: no visible global function definition for ‘slot<-’ show,SequenceInfo: no visible global function definition for ‘show’ Undefined global functions or variables: dev.off jpeg lines new pdf rgb show slot slot<- Consider adding importFrom("grDevices", "dev.off", "jpeg", "pdf", "rgb") importFrom("graphics", "lines") importFrom("methods", "new", "show", "slot", "slot<-") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available File ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/ASEB/libs/ASEB.so’: Found ‘_rand’, possibly from ‘rand’ (C) Found ‘_srand’, possibly from ‘srand’ (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.12-bioc/meat/ASEB.Rcheck/00check.log’ for details.
ASEB.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ASEB ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘ASEB’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c asebC.cpp -o asebC.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ASEB.so asebC.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-ASEB/00new/ASEB/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ASEB)
ASEB.Rcheck/ASEB-Ex.timings
name | user | system | elapsed | |
SequenceInfo | 0.002 | 0.000 | 0.002 | |
asebProteins | 2.077 | 0.022 | 2.105 | |
asebSites | 1.557 | 0.015 | 1.574 | |
drawEScurve | 1.622 | 0.036 | 1.687 | |
drawStat | 1.924 | 0.018 | 1.957 | |
readSequence | 1.099 | 0.004 | 1.105 | |