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INSTALL report for AMARETTO on tokay1

This page was generated on 2020-08-09 12:16:34 -0400 (Sun, 09 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE AMARETTO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 48/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AMARETTO 1.5.0
Olivier Gevaert
Snapshot Date: 2020-08-08 14:51:01 -0400 (Sat, 08 Aug 2020)
URL: https://git.bioconductor.org/packages/AMARETTO
Branch: master
Last Commit: 07c0d39
Last Changed Date: 2020-04-27 15:24:46 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: AMARETTO
Version: 1.5.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/AMARETTO_1.5.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.5.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.5.0.zip && rm AMARETTO_1.5.0.tar.gz AMARETTO_1.5.0.zip
StartedAt: 2020-08-08 17:49:39 -0400 (Sat, 08 Aug 2020)
EndedAt: 2020-08-08 17:51:16 -0400 (Sat, 08 Aug 2020)
EllapsedTime: 96.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/AMARETTO_1.5.0.tar.gz && rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.5.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL AMARETTO_1.5.0.zip && rm AMARETTO_1.5.0.tar.gz AMARETTO_1.5.0.zip
###
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100 5472k  100 5472k    0     0  55.9M      0 --:--:-- --:--:-- --:--:-- 58.0M

install for i386

* installing *source* package 'AMARETTO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AMARETTO'
    finding HTML links ... done
    AMARETTO_CreateModuleData               html  
    AMARETTO_CreateRegulatorPrograms        html  
    AMARETTO_Download                       html  
    AMARETTO_EvaluateTestSet                html  
    AMARETTO_ExportResults                  html  
    AMARETTO_HTMLreport                     html  
    AMARETTO_Initialize                     html  
    AMARETTO_LarsenBased                    html  
    AMARETTO_LearnRegulatoryProgramsLarsen
                                            html  
    AMARETTO_Preprocess                     html  
    AMARETTO_ReassignGenesToClusters        html  
    AMARETTO_Run                            html  
    AMARETTO_VisualizeModule                html  
    BatchData                               html  
    Beta.NA                                 html  
    ComBat_NoFiles                          html  
    CreateRegulatorData                     html  
    Driver_Genes                            html  
    FindTranscriptionallyPredictive_CNV     html  
    GeneSetDescription                      html  
    GmtFromModules                          html  
    HyperGTestGeneEnrichment                html  
    L                                       html  
    Lambda_Sequence                         html  
    MsigdbMapping                           html  
    Preprocess_MAdata                       html  
    ProcessedDataLIHC                       html  
    Save_CancerSite                         html  
    TCGA_BatchCorrection_MolecularData      html  
    TCGA_GENERIC_BatchCorrection            html  
    TCGA_GENERIC_CheckBatchEffect           html  
    TCGA_GENERIC_CleanUpSampleNames         html  
    TCGA_GENERIC_GetSampleGroups            html  
    TCGA_GENERIC_MergeData                  html  
    TCGA_Load_GISTICdata                    html  
    TCGA_Load_MolecularData                 html  
    aprior                                  html  
    bprior                                  html  
    build.design                            html  
    cacheResource                           html  
    computeGisticURL                        html  
    design.mat                              html  
    filter.absent                           html  
    geneFiltering                           html  
    get_firehoseData                        html  
    int.eprior                              html  
    it.sol                                  html  
    list.batch                              html  
    plot_run_history                        html  
    postmean                                html  
    postvar                                 html  
    printf                                  html  
    readGMT                                 html  
    read_gct                                html  
    trim.dat                                html  
    write_gct                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AMARETTO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMARETTO' as AMARETTO_1.5.0.zip
* DONE (AMARETTO)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'AMARETTO' successfully unpacked and MD5 sums checked