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BUILD report for ADaCGH2 on tokay1

This page was generated on 2020-08-09 11:59:29 -0400 (Sun, 09 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ADaCGH2 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 15/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ADaCGH2 2.29.0
Ramon Diaz-Uriarte
Snapshot Date: 2020-08-08 14:51:01 -0400 (Sat, 08 Aug 2020)
URL: https://git.bioconductor.org/packages/ADaCGH2
Branch: master
Last Commit: 31c21bb
Last Changed Date: 2020-04-27 14:23:32 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  ERROR  ERROR  skipped 
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  ERROR  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  ERROR [ ERROR ] skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: ADaCGH2
Version: 2.29.0
Command: chmod a+r ADaCGH2 -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ADaCGH2
StartedAt: 2020-08-08 19:25:19 -0400 (Sat, 08 Aug 2020)
EndedAt: 2020-08-08 19:25:22 -0400 (Sat, 08 Aug 2020)
EllapsedTime: 2.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: ADaCGH2_2.29.0.tar.gz
PackageFileSize: 720.3 KiB

Command output

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### Running command:
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###   chmod a+r ADaCGH2 -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ADaCGH2
###
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* checking for file 'ADaCGH2/DESCRIPTION' ... OK
* preparing 'ADaCGH2':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'ADaCGH2' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65:12: warning: unused variable 'totalNorm' [-Wunused-variable]
     double totalNorm;
            ^~~~~~~~~
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:152:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
         
r_haarseg.c:176:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
         
r_haarseg.c:128:9: warning: unused variable 'j' [-Wunused-variable]
   int k,j;
         ^
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:97:27: warning: 'highNonNormed' may be used uninitialized in this function [-Wmaybe-uninitialized]
             highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1];
             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:96:26: warning: 'lowNonNormed' may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1];
             ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:99:27: warning: 'highWeightSum' may be used uninitialized in this function [-Wmaybe-uninitialized]
             highWeightSum += weight[highEnd] - weight[k-1];
             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:98:26: warning: 'lowWeightSum' may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowWeightSum += weight[k-1] - weight[lowEnd];
             ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ADaCGH2.dll tmp.def init.o r_haarseg.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeirCDD/Rinst2e886ed450ee/00LOCK-ADaCGH2/00new/ADaCGH2/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: object 'is.factor.ff' is not exported by 'namespace:ff'
Execution halted
ERROR: lazy loading failed for package 'ADaCGH2'
* removing 'C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeirCDD/Rinst2e886ed450ee/ADaCGH2'
      -----------------------------------
ERROR: package installation failed