Back to Build/check report for BioC 3.11 experimental data

CHECK report for rRDPData on malbec2

This page was generated on 2020-10-15 20:45:59 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE rRDPData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 315/391HostnameOS / ArchINSTALLBUILDCHECK
rRDPData 1.8.0
Michael Hahsler
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/rRDPData
Branch: RELEASE_3_11
Last Commit: 9ad739a
Last Changed Date: 2020-04-27 15:30:30 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: rRDPData
Version: 1.8.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:rRDPData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings rRDPData_1.8.0.tar.gz
StartedAt: 2020-10-15 14:03:51 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 14:04:21 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 30.0 seconds
RetCode: 0
Status:  OK 
CheckDir: rRDPData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:rRDPData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings rRDPData_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/rRDPData.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rRDPData/DESCRIPTION’ ... OK
* this is package ‘rRDPData’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rRDPData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 58.7Mb
  sub-directories of 1Mb or more:
    extdata  58.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
16S 9.833  0.407   5.849
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/rRDPData.Rcheck/00check.log’
for details.



Installation output

rRDPData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL rRDPData
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘rRDPData’ ...
** using staged installation
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rRDPData)

Tests output


Example timings

rRDPData.Rcheck/rRDPData-Ex.timings

nameusersystemelapsed
16S9.8330.4075.849