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CHECK report for optimalFlowData on malbec2

This page was generated on 2020-10-15 20:45:54 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE optimalFlowData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 256/391HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.0.0
Hristo Inouzhe
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/optimalFlowData
Branch: RELEASE_3_11
Last Commit: 949275c
Last Changed Date: 2020-04-27 16:45:22 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: optimalFlowData
Version: 1.0.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings optimalFlowData_1.0.0.tar.gz
StartedAt: 2020-10-15 13:51:40 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 13:52:37 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 57.2 seconds
RetCode: 0
Status:  OK 
CheckDir: optimalFlowData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings optimalFlowData_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.0Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL optimalFlowData
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0410.0090.050
Cytometry100.0300.0110.041
Cytometry110.0340.0070.041
Cytometry120.0330.0090.041
Cytometry130.0340.0110.047
Cytometry140.0540.0070.063
Cytometry150.0220.0010.023
Cytometry160.0220.0000.023
Cytometry170.0860.0110.097
Cytometry180.0600.0120.071
Cytometry190.0310.0030.035
Cytometry20.0650.0050.068
Cytometry200.0560.0040.060
Cytometry210.0750.0000.075
Cytometry220.0300.0030.033
Cytometry230.0290.0010.030
Cytometry240.0310.0000.031
Cytometry250.0260.0030.029
Cytometry260.0310.0000.032
Cytometry270.0910.0120.103
Cytometry280.0990.0050.103
Cytometry290.0860.0000.086
Cytometry30.0160.0000.017
Cytometry300.0680.0000.068
Cytometry310.0680.0000.068
Cytometry320.0730.0030.077
Cytometry330.0410.0000.041
Cytometry340.1090.0110.122
Cytometry350.0560.0040.060
Cytometry360.0150.0030.018
Cytometry370.0160.0010.017
Cytometry380.0160.0000.017
Cytometry390.0170.0000.016
Cytometry40.0190.0000.019
Cytometry400.0420.0000.043
Cytometry50.0180.0000.019
Cytometry60.0170.0000.018
Cytometry70.0140.0030.017
Cytometry80.0190.0010.018
Cytometry90.0300.0000.031
buildDatabase0.5850.0550.641
cytometry.diagnosis0.0020.0010.002
noise.types0.0010.0000.002