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### Running command:
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###   rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFeatures.buildbin-libdir GenomicFeatures_1.40.1.tar.gz
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install for i386

* installing *source* package 'GenomicFeatures' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicFeatures'
    finding HTML links ... done
    FeatureDb-class                         html  
    finding level-2 HTML links ... done

    TxDb-class                              html  
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    as-format-methods                       html  
    coordinate-mapping-methods              html  
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    coverageByTranscript                    html  
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    disjointExons                           html  
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    exonicParts                             html  
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    extractTranscriptSeqs                   html  
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    extractUpstreamSeqs                     html  
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    features                                html  
    getPromoterSeq-methods                  html  
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    id2name                                 html  
    makeFeatureDbFromUCSC                   html  
    makeTxDb                                html  
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    makeTxDbFromBiomart                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromBiomart.Rd:144: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    makeTxDbFromEnsembl                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromEnsembl.Rd:80: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    makeTxDbFromGFF                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGFF.Rd:29: file link 'GFF3File' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGFF.Rd:30: file link 'GTFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGFF.Rd:99: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGFF.Rd:101: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
    makeTxDbFromGRanges                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGRanges.Rd:10: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGRanges.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGRanges.Rd:21: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGRanges.Rd:57: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromGRanges.Rd:63: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    makeTxDbFromUCSC                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromUCSC.Rd:51: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromUCSC.Rd:52: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/makeTxDbFromUCSC.Rd:121: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    makeTxDbPackage                         html  
    mapIdsToRanges                          html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/mapIdsToRanges.Rd:24: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    mapRangesToIds                          html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/mapRangesToIds.Rd:25: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    microRNAs                               html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/microRNAs.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    nearest-methods                         html  
    select-methods                          html  
    transcriptLengths                       html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptLengths.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptLengths.Rd:107: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    transcriptLocs2refLocs                  html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptLocs2refLocs.Rd:36: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
    transcripts                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcripts.Rd:84: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcripts.Rd:90: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcripts.Rd:93: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcripts.Rd:126: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcripts.Rd:128: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    transcriptsBy                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsBy.Rd:49: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsBy.Rd:52: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsBy.Rd:54: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsBy.Rd:79: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsBy.Rd:89: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    transcriptsByOverlaps                   html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsByOverlaps.Rd:46: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsByOverlaps.Rd:49: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIhok9a/R.INSTALLb4c5aa92768/GenomicFeatures/man/transcriptsByOverlaps.Rd:59: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomicFeatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicFeatures' as GenomicFeatures_1.40.1.zip
* DONE (GenomicFeatures)