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INSTALL report for biosvd on tokay2

This page was generated on 2020-10-17 11:56:10 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE biosvd PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 183/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biosvd 2.24.0
Anneleen Daemen , Matthew Brauer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/biosvd
Branch: RELEASE_3_11
Last Commit: 4aa7204
Last Changed Date: 2020-04-27 14:38:03 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR  OK 

Summary

Package: biosvd
Version: 2.24.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/biosvd_2.24.0.tar.gz && rm -rf biosvd.buildbin-libdir && mkdir biosvd.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biosvd.buildbin-libdir biosvd_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL biosvd_2.24.0.zip && rm biosvd_2.24.0.tar.gz biosvd_2.24.0.zip
StartedAt: 2020-10-16 17:42:06 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:42:59 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 52.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/biosvd_2.24.0.tar.gz && rm -rf biosvd.buildbin-libdir && mkdir biosvd.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biosvd.buildbin-libdir biosvd_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL biosvd_2.24.0.zip && rm biosvd_2.24.0.tar.gz biosvd_2.24.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  523k  100  523k    0     0  5876k      0 --:--:-- --:--:-- --:--:-- 6386k

install for i386

* installing *source* package 'biosvd' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biosvd'
    finding HTML links ... done
    Eigensystem-class                       html  
    EigensystemPlotParam-class              html  
    HeLaData                                html  
    StarvationData                          html  
    YeastData                               html  
    assayColorMap-set                       html  
    biosvd                                  html  
    compute-methods                         html  
    contrast-set                            html  
    exclude-methods                         html  
    featureColorMap-set                     html  
    figure-set                              html  
    filenames-set                           html  
    negativeValues-set                      html  
    palette-set                             html  
    path-set                                html  
    plot-methods                            html  
    plots-set                               html  
    prefix-set                              html  
    project-methods                         html  
    report-methods                          html  
    whichAssays-set                         html  
    whichEigenassays-set                    html  
    whichEigenfeatures-set                  html  
    whichFeatures-set                       html  
    whichPolarAxes-set                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'biosvd' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'biosvd' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biosvd' ...
** testing if installed package can be loaded
Warning: Package 'biosvd' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'biosvd' as biosvd_2.24.0.zip
* DONE (biosvd)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'biosvd' successfully unpacked and MD5 sums checked