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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/a4Base_1.36.0.tar.gz && rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=a4Base.buildbin-libdir a4Base_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL a4Base_1.36.0.zip && rm a4Base_1.36.0.tar.gz a4Base_1.36.0.zip
###
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install for i386

* installing *source* package 'a4Base' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12 
** help
*** installing help indices
  converting help for package 'a4Base'
    finding HTML links ... done
    ExpressionSetWithComputation            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/ExpressionSetWithComputation.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/ExpressionSetWithComputation.Rd:24: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/ExpressionSetWithComputation.Rd:25: file link 'VersionedBiobase' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/ExpressionSetWithComputation.Rd:26: file link 'Versioned' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/ExpressionSetWithComputation.Rd:33: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    a4palette                               html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/a4palette.Rd:27: file link 'rainbow' in package 'grDevices' does not exist and so has been treated as a topic
    addQuantilesColors                      html  
    boxPlot                                 html  
    combineTwoExpressionSet                 html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/combineTwoExpressionSet.Rd:22: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    computeLogRatio                         html  
    createExpressionSet                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/createExpressionSet.Rd:30: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    filterVarInt                            html  
    heatmap.expressionSet                   html  
    histPvalue                              html  
    histpvalueplotter                       html  
    lassoReg                                html  
    limmaTwoLevels                          html  
    logReg                                  html  
    nlcvTT                                  html  
    plot1gene                               html  
    plotComb2Samples                        html  
    plotCombMultSamples                     html  
    plotCombination2genes                   html  
    plotLogRatio                            html  
    probabilitiesPlot                       html  
    probe2gene                              html  
    profilesPlot                            html  
    propDEgenes-methods                     html  
    propDEgenes                             html  
    propdegenescalculation                  html  
    replicates                              html  
    spectralMap-methods                     html  
    spectralMap                             html  
    tTest                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp2jdbzH/R.INSTALL12586ce64844/a4Base/man/tTest.Rd:40: file link 'rowttests' in package 'genefilter' does not exist and so has been treated as a topic
    topTable-methods                        html  
    volcanoPlot-methods                     html  
    volcanoPlot                             html  
    volcanoplotter                          html  
** building package indices
** testing if installed package can be loaded from temporary location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'a4Base' ...
** testing if installed package can be loaded
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'a4Base' as a4Base_1.36.0.zip
* DONE (a4Base)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'a4Base' successfully unpacked and MD5 sums checked