CHECK report for AnalysisPageServer on machv2
This page was generated on 2020-10-17 11:58:02 -0400 (Sat, 17 Oct 2020).
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TO THE DEVELOPERS/MAINTAINERS OF THE AnalysisPageServer PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
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AnalysisPageServer 1.22.0
Brad Friedman
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/AnalysisPageServer |
| Branch: RELEASE_3_11 |
| Last Commit: 2a18bb2 |
| Last Changed Date: 2020-04-27 14:45:57 -0400 (Mon, 27 Apr 2020) |
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | ERROR | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ ERROR ] | OK | |
Summary
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:AnalysisPageServer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings AnalysisPageServer_1.22.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/AnalysisPageServer.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AnalysisPageServer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AnalysisPageServer’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'fork', 'FastRWeb'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/RubaXa/Sortable@1.4.2/st/logo.png
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/select2/select2@3.5.4/select2.png
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/select2/select2@3.5.4/select2x2.png
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/RubaXa/Sortable@1.4.2/st/logo.png
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/select2/select2@3.5.4/select2.png
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/select2/select2@3.5.4/select2x2.png
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Forms/show/compositeview/landingTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Forms/show/compositeview/primaryTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Forms/show/compositeview/secondaryTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Analysis/show/AnalysisPageShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Analysis/show/AnalysisPageShowRouter.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/ToolOverviewShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/ToolOverviewBodyView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/ToolOverviewListView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/bodyTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/listTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/layoutview/ToolOverviewView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/layoutview/template.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/tooloverview-app.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/APSLandingPageShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/EPLandingPageShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/EPStudyFormShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/LandingPageShowRouter.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/APSLandingPageView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/APStemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/EPLandingPageView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/EPtemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/ep-landing.less
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/PrimaryPageShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/PrimaryPageShowRouter.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/layoutview/PrimaryPageView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/layoutview/template.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/SuggestionsCallbackController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/ComboboxParameterModel.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/createComboboxParameterModel.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/multipleMixin.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/nonMultipleMixin.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/nonSelfDependentMixin.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/selfDependentMixin.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/ComboboxShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/Select2ComboboxBehavior.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/itemview/ComboboxParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/itemview/landingTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/ConditionalPersistent/ConditionalPersistentController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/ConditionalPersistent/models/PersistentParameterCollection.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/ConditionalPersistent/models/PersistentParameterModel.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/SelectParameterModel.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/createSelectParameterModel.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/multipleMixin.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/nonMultipleMixin.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/Select2SelectBehavior.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/SelectShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/DropdownSelectParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/RadioSelectParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/SelectParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/getSelectParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/radioTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select2Behavior/Select2Behavior.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select2Behavior/ep-select2-no-spinner.css
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/SummaryShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/ParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/ParametersSummaryView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/itemTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/template.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/fetch/ParametersFetchController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/ArrayParameterModel.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/CompoundParameterModel.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/ParameterChildrenCollection.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/ParameterCollection.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/ParametersShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/behaviors/ParameterBehavior.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/ArrayParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/CompoundParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/arrayTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/compoundTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/BoolParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/FileParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/SliderParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/TextParameterView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/boolTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/fileTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/sliderTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/textTemplate.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/DatasetsShowController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/DatasetsShowRouter.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/collectionview/DatasetsView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/layoutview/DatasetView.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/layoutview/template.html
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/fetch/AnalysisFetchController.js
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/fetch/PagesFetchController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/ArrayListView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/TabsContentView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/TabsNavView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/navItemTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/ArrayListItemView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/ArrayTabsView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/itemTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/tabsTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/SideMenu/show/MenuShowController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/SideMenu/show/itemview/SideMenuView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/SideMenu/show/itemview/template.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/SidebarShowController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/behaviors/AccordionGroupBehavior.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/FilterItemView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/FiltersView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/itemTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/template.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/CustomSectionView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/TaggingView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/sectionTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/taggingTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/ParametersView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/SidebarView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/parametersTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/sidebarTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/download/SvgDownloadController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/PointDetailsShowController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/d3BrushTaggingController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/d3BrushZoomingController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/itemview/popupTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/TbodyShowController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/itemview/TbodyView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/itemview/chunkTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/itemview/template.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/TheadShowController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/TheadItemView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/TheadView.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/itemTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/summaryTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/template.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/download/TableDataDownloadController.js
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/show/itemview/characterTemplate.html
AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/show/itemview/numericTemplate.html
AnalysisPageServer/vignettes/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/vignettes/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/vignettes/static-example/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/vignettes/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/vignettes/static-example/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/vignettes/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/vignettes/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/select2/select2@3.5.4/select2x2.png
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/select2/select2@3.5.4/select2x2.png
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/select2/select2@3.5.4/select2x2.png
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/layoutview
AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/collectionview
AnalysisPageServer/vignettes/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AnalysisPageServer’ can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'AnalysisPageServer' is deprecated and will be removed from
See ‘/Users/biocbuild/bbs-3.11-bioc/meat/AnalysisPageServer.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 9.4Mb
sub-directories of 1Mb or more:
htdocs 8.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
‘FastRWeb’ ‘RUnit’ ‘fork’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: ‘log4r:::INFO’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.head.string: no visible global function definition for ‘head’
.inject.file.params: no visible global function definition for ‘str’
.inject.file.params : <anonymous>: no visible global function
definition for ‘str’
.prepare.params: no visible binding for global variable ‘svg’
check.memory: no visible global function definition for
‘capture.output’
check.same.svgs: no visible global function definition for
‘checkEquals’
checkPackageVersion: no visible global function definition for
‘packageVersion’
checkRookForkForVignettes: no visible binding for '<<-' assignment to
‘no.rook.fork.msg’
checkRookForkForVignettes : <anonymous>: no visible binding for global
variable ‘no.rook.fork.msg’
checkRookForkForVignettes: no visible binding for global variable
‘no.rook.fork.msg’
client.ip: no visible binding for global variable ‘SERVER’
embed.APS.dataset: no visible binding for global variable ‘svg’
embed.APS.dataset: no visible global function definition for ‘dev.off’
execute.handler: no visible binding for global variable ‘svg’
execute.handler: no visible global function definition for ‘dev.cur’
execute.handler: no visible global function definition for ‘dev.off’
execute.handler: no visible global function definition for ‘dev.list’
getTraceback: no visible global function definition for
‘capture.output’
inches.png: no visible global function definition for ‘png’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
assignment to ‘GET’
new.FastRWeb.analysis.page.run : handler: no visible global function
definition for ‘parse.multipart’
new.FastRWeb.analysis.page.run : handler: no visible global function
definition for ‘capture.output’
new.FastRWeb.analysis.page.run : handler: no visible binding for global
variable ‘request’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
assignment to ‘POST’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
assignment to ‘SERVER’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
assignment to ‘FILES’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
assignment to ‘setContentType’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
assignment to ‘setHeader’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
assignment to ‘sendBin’
new.FastRWeb.analysis.page.run : handler: no visible binding for global
variable ‘SERVER’
new.FastRWeb.analysis.page.run : handler: no visible global function
definition for ‘WebResult’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
assignment to ‘POST’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
assignment to ‘GET’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
assignment to ‘SERVER’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
assignment to ‘FILES’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
assignment to ‘setContentType’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
assignment to ‘setHeader’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
assignment to ‘sendBin’
new.rook.analysis.page.app : handler: no visible global function
definition for ‘capture.output’
new.rook.analysis.page.app: no visible binding for global variable
‘App’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘GET’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘POST’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘FILES’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘is.textarea.wrap.request’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘setContentType’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘setHeader’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘in.analysis’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘analysis.id’
rapache.app.from.registry : <anonymous>: no visible binding for '<<-'
assignment to ‘analysis.id’
rapache.app.from.registry : <anonymous>: no visible binding for '<<-'
assignment to ‘in.analysis’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘events’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘plot.file’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘sendBin’
rapache.app.from.registry : <anonymous> : <anonymous>: no visible
global function definition for ‘process.response’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘params’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘clean.tmpdir’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘file.params’
rapache.app.from.registry : <anonymous>: no visible binding for '<<-'
assignment to ‘plot.file’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘temp.plot.file’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘SERVER’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘analysis’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘brand’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘page.params’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘all.pages’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘status’
rapache.app.from.registry : <anonymous>: no visible binding for global
variable ‘retrieve’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘handlers’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘capture.output’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘dev.list’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘sessionInfo’
rapache.app.from.registry : <anonymous>: no visible global function
definition for ‘resources’
rapache.app.from.registry : <anonymous> : <anonymous>: no visible
global function definition for ‘handler’
startRookAnalysisPageServer: no visible binding for '<<-' assignment to
‘server.pid’
startRookAnalysisPageServer: no visible binding for global variable
‘server.pid’
test.package: no visible global function definition for
‘defineTestSuite’
test.package: no visible global function definition for ‘runTestSuite’
test.package: no visible global function definition for
‘printTextProtocol’
Undefined global functions or variables:
App FILES GET POST SERVER WebResult all.pages analysis analysis.id
brand capture.output checkEquals clean.tmpdir defineTestSuite dev.cur
dev.list dev.off events file.params handler handlers head in.analysis
is.textarea.wrap.request no.rook.fork.msg packageVersion page.params
params parse.multipart plot.file png printTextProtocol
process.response request resources retrieve runTestSuite sendBin
server.pid sessionInfo setContentType setHeader status str svg
temp.plot.file
Consider adding
importFrom("grDevices", "dev.cur", "dev.list", "dev.off", "png", "svg")
importFrom("utils", "capture.output", "head", "packageVersion",
"sessionInfo", "str")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... NOTE
The following directory looks like a leftover from 'knitr':
‘figure’
Please remove from your package.
* checking examples ... ERROR
Running examples in ‘AnalysisPageServer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: new.datanode.array
> ### Title: new.datanode.array
> ### Aliases: new.datanode.array
>
> ### ** Examples
>
> html.node <- example(new.datanode.html)$value
nw.dt.> new.datanode.html(name = "shakespeare",
nw.dt.+ value = "<i>Shall I compute thee to a summer's data?</i>")
$type
[1] "html"
$name
[1] "shakespeare"
$label
[1] "shakespeare"
$description
[1] "shakespeare"
$value
[1] "<i>Shall I compute thee to a summer's data?</i>"
attr(,"class")
[1] "AnalysisPageDataNode"
> simple.node <- example(new.datanode.simple)$value
nw.dt.> new.datanode.simple(name = "x", value = 100)
$type
[1] "simple"
$name
[1] "x"
$label
[1] "x"
$description
[1] "x"
$value
[1] 100
attr(,"class")
[1] "AnalysisPageDataNode"
> new.datanode.array(name = "arr", children = list(html.node, simple.node))
----------- FAILURE REPORT --------------
--- failure: length > 1 in coercion to logical ---
--- srcref ---
:
--- package (from environment) ---
AnalysisPageServer
--- call from context ---
stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
--- call from argument ---
length(children) == 0 || sapply(children, is, "AnalysisPageDataNode")
--- R stacktrace ---
where 1: stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
where 2: new.datanode.array(name = "arr", children = list(html.node, simple.node))
--- value of length: 2 type: logical ---
[1] TRUE TRUE
--- function from context ---
function (..., exprs, exprObject, local = TRUE)
{
n <- ...length()
if ((has.e <- !missing(exprs)) || !missing(exprObject)) {
if (n || (has.e && !missing(exprObject)))
stop("Only one of 'exprs', 'exprObject' or expressions, not more")
envir <- if (isTRUE(local))
parent.frame()
else if (isFALSE(local))
.GlobalEnv
else if (is.environment(local))
local
else stop("'local' must be TRUE, FALSE or an environment")
E1 <- if (has.e && is.call(exprs <- substitute(exprs)))
exprs[[1]]
cl <- if (is.symbol(E1) && E1 == quote(`{`)) {
exprs[[1]] <- quote(stopifnot)
exprs
}
else as.call(c(quote(stopifnot), if (!has.e) exprObject else as.expression(exprs)))
names(cl) <- NULL
return(eval(cl, envir = envir))
}
Dparse <- function(call, cutoff = 60L) {
ch <- deparse(call, width.cutoff = cutoff)
if (length(ch) > 1L)
paste(ch[1L], "....")
else ch
}
head <- function(x, n = 6L) x[seq_len(if (n < 0L) max(length(x) +
n, 0L) else min(n, length(x)))]
abbrev <- function(ae, n = 3L) paste(c(head(ae, n), if (length(ae) >
n) "...."), collapse = "\n ")
for (i in seq_len(n)) {
r <- ...elt(i)
if (!(is.logical(r) && !anyNA(r) && all(r))) {
dots <- match.call()[-1L]
if (is.null(msg <- names(dots)) || !nzchar(msg <- msg[i])) {
cl.i <- dots[[i]]
msg <- if (is.call(cl.i) && identical(cl.i[[1]],
quote(all.equal)) && (is.null(ni <- names(cl.i)) ||
length(cl.i) == 3L || length(cl.i <- cl.i[!nzchar(ni)]) ==
3L))
sprintf(gettext("%s and %s are not equal:\n %s"),
Dparse(cl.i[[2]]), Dparse(cl.i[[3]]), abbrev(r))
else sprintf(ngettext(length(r), "%s is not TRUE",
"%s are not all TRUE"), Dparse(cl.i))
}
stop(simpleError(msg, call = if (p <- sys.parent(1L))
sys.call(p)))
}
}
invisible()
}
<bytecode: 0x7fd8ed0cbab0>
<environment: namespace:base>
--- function search by body ---
Function stopifnot in namespace base has this body.
----------- END OF FAILURE REPORT --------------
Fatal error: length > 1 in coercion to logical
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘unit_tests.R’
ERROR
Running the tests in ‘tests/unit_tests.R’ failed.
Last 13 lines of output:
else sprintf(ngettext(length(r), "%s is not TRUE",
"%s are not all TRUE"), Dparse(cl.i))
}
stop(simpleError(msg, call = if (p <- sys.parent(1L))
sys.call(p)))
}
}
invisible()
}
<bytecode: 0x7f953606c7b8>
<environment: namespace:base>
--- function search by body ---
Function stopifnot in namespace base has this body.
----------- END OF FAILURE REPORT --------------
Fatal error: length > 1 in coercion to logical
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 WARNING, 7 NOTEs
See
‘/Users/biocbuild/bbs-3.11-bioc/meat/AnalysisPageServer.Rcheck/00check.log’
for details.
Installation output
AnalysisPageServer.Rcheck/00install.out
Tests output
AnalysisPageServer.Rcheck/tests/unit_tests.Rout.fail
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> AnalysisPageServer:::test.package()
Loading required package: RUnit
Loading required package: AnalysisPageServer
Pattern = /^test.*R$/
Matching test files:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.analysis.page.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.annotate.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.aps.urlEncode.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.data.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.error.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.eval.within.time.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.events.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.filter.widget.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.knitAPS.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.links.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.memory.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.messages.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.param.transformer.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.params.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.persistent.params.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.plot.pars.transformer.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.rapache.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.registry.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.remove.old.files.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.response.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.rook.analysis.page.server.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.search.replace.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.static.analysis.page.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.tests.R
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/AnalysisPageServer/unitTests/test.validate.param.list.R
Executing test function test.analysis.page ...
exct.h> page <- new.analysis.page(AnalysisPageServer:::sine.handler)
exct.h> plot.file <- tempfile(fileext = ".svg")
exct.h> plist <- lapply(list(xmin=-2*pi, xmax=2*pi, n= 50), rjson::toJSON)
exct.h> sine.data <- AnalysisPageServer:::execute.handler(page, plist, plot.file=plot.file)
exct.h> # now sine.data is an AnnotatedDataFrame
exct.h>
exct.h>
exct.h>
done successfully.
Executing test function test.annotate.data.frame ... done successfully.
Executing test function test.inject.file.params ... done successfully.
Executing test function test.prepare.params ... done successfully.
Executing test function test.annotator.heatmap ... done successfully.
Executing test function test.annotator.simple ... done successfully.
Executing test function test.double.annotation ... done successfully.
Executing test function test.uniquify.ids ... done successfully.
Executing test function test.aps.urlEncode ... done successfully.
Executing test function test.data.frame.to.json ... done successfully.
Executing test function test.data.nodes ... ----------- FAILURE REPORT --------------
--- failure: length > 1 in coercion to logical ---
--- srcref ---
:
--- package (from environment) ---
AnalysisPageServer
--- call from context ---
stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
--- call from argument ---
length(children) == 0 || sapply(children, is, "AnalysisPageDataNode")
--- R stacktrace ---
where 1: stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
where 2: new.datanode.array(name = "baz", children = list(n1, n2))
where 3: eval(call)
where 4: eval(got <- eval(call))
where 5: eval(call)
where 6: doTryCatch(return(expr), name, parentenv, handler)
where 7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 8: tryCatchList(expr, classes, parentenv, handlers)
where 9: tryCatch({
value <- eval(call)
list(TRUE, value)
}, error = function(e) {
list(FALSE, e$message)
})
where 10: lives.ok(eval(got <- eval(call)), name)
where 11: test.datanode(new.datanode.array(name = "baz", children = list(n1,
n2)), list(type = "array", name = "baz", label = "baz", description = "baz",
value = list(n1, n2)))
where 12: func()
where 13: system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest)
where 14: doTryCatch(return(expr), name, parentenv, handler)
where 15: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 16: tryCatchList(expr, classes, parentenv, handlers)
where 17: tryCatch(expr, error = function(e) {
call <- conditionCall(e)
if (!is.null(call)) {
if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L)
dcall <- deparse(call)[1L]
prefix <- paste("Error in", dcall, ": ")
LONG <- 75L
sm <- strsplit(conditionMessage(e), "\n")[[1L]]
w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
if (is.na(w))
w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
type = "b")
if (w > LONG)
prefix <- paste0(prefix, "\n ")
}
else prefix <- "Error : "
msg <- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L]))
if (!silent && isTRUE(getOption("show.error.messages"))) {
cat(msg, file = outFile)
.Internal(printDeferredWarnings())
}
invisible(structure(msg, class = "try-error", condition = e))
})
where 18: try(system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest))
where 19: .executeTestCase(funcName, envir = sandbox, setUpFunc = .setUp,
tearDownFunc = .tearDown)
where 20: .sourceTestFile(testFile, testSuite$testFuncRegexp)
where 21: runTestSuite(suite, verbose = TRUE)
where 22: AnalysisPageServer:::test.package()
--- value of length: 2 type: logical ---
[1] TRUE TRUE
--- function from context ---
function (..., exprs, exprObject, local = TRUE)
{
n <- ...length()
if ((has.e <- !missing(exprs)) || !missing(exprObject)) {
if (n || (has.e && !missing(exprObject)))
stop("Only one of 'exprs', 'exprObject' or expressions, not more")
envir <- if (isTRUE(local))
parent.frame()
else if (isFALSE(local))
.GlobalEnv
else if (is.environment(local))
local
else stop("'local' must be TRUE, FALSE or an environment")
E1 <- if (has.e && is.call(exprs <- substitute(exprs)))
exprs[[1]]
cl <- if (is.symbol(E1) && E1 == quote(`{`)) {
exprs[[1]] <- quote(stopifnot)
exprs
}
else as.call(c(quote(stopifnot), if (!has.e) exprObject else as.expression(exprs)))
names(cl) <- NULL
return(eval(cl, envir = envir))
}
Dparse <- function(call, cutoff = 60L) {
ch <- deparse(call, width.cutoff = cutoff)
if (length(ch) > 1L)
paste(ch[1L], "....")
else ch
}
head <- function(x, n = 6L) x[seq_len(if (n < 0L) max(length(x) +
n, 0L) else min(n, length(x)))]
abbrev <- function(ae, n = 3L) paste(c(head(ae, n), if (length(ae) >
n) "...."), collapse = "\n ")
for (i in seq_len(n)) {
r <- ...elt(i)
if (!(is.logical(r) && !anyNA(r) && all(r))) {
dots <- match.call()[-1L]
if (is.null(msg <- names(dots)) || !nzchar(msg <- msg[i])) {
cl.i <- dots[[i]]
msg <- if (is.call(cl.i) && identical(cl.i[[1]],
quote(all.equal)) && (is.null(ni <- names(cl.i)) ||
length(cl.i) == 3L || length(cl.i <- cl.i[!nzchar(ni)]) ==
3L))
sprintf(gettext("%s and %s are not equal:\n %s"),
Dparse(cl.i[[2]]), Dparse(cl.i[[3]]), abbrev(r))
else sprintf(ngettext(length(r), "%s is not TRUE",
"%s are not all TRUE"), Dparse(cl.i))
}
stop(simpleError(msg, call = if (p <- sys.parent(1L))
sys.call(p)))
}
}
invisible()
}
<bytecode: 0x7f953606c7b8>
<environment: namespace:base>
--- function search by body ---
Function stopifnot in namespace base has this body.
----------- END OF FAILURE REPORT --------------
Fatal error: length > 1 in coercion to logical
Example timings
AnalysisPageServer.Rcheck/AnalysisPageServer-Ex.timings