Kevin Blighe
| Snapshot Date: 2020-04-12 09:30:11 -0400 (Sun, 12 Apr 2020) |
| URL: https://git.bioconductor.org/packages/RegParallel |
| Branch: RELEASE_3_10 |
| Last Commit: a83241c |
| Last Changed Date: 2019-10-29 13:29:55 -0400 (Tue, 29 Oct 2019) |
| Back to Build/check report for BioC 3.10 experimental data |
This page was generated on 2020-04-12 17:45:07 -0400 (Sun, 12 Apr 2020).
| Package 294/384 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| RegParallel 1.4.0 Kevin Blighe
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: RegParallel |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:RegParallel.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings RegParallel_1.4.0.tar.gz |
| StartedAt: 2020-04-12 13:38:05 -0400 (Sun, 12 Apr 2020) |
| EndedAt: 2020-04-12 13:40:36 -0400 (Sun, 12 Apr 2020) |
| EllapsedTime: 151.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RegParallel.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:RegParallel.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings RegParallel_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/RegParallel.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RegParallel/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RegParallel’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'doParallel', 'foreach', 'parallel', 'iterators', 'data.table',
'stringr', 'survival', 'arm', 'MASS'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RegParallel’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
RegParallel 101.224 2.996 52.073
glm.nbParallel 39.092 0.568 20.814
bayesglmParallel 36.360 0.452 19.724
glmParallel 12.744 1.584 5.565
coxphParallel 6.900 0.252 3.531
clogitParallel 6.084 0.204 3.630
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.10-data-experiment/meat/RegParallel.Rcheck/00check.log’
for details.
RegParallel.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL RegParallel ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘RegParallel’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RegParallel)
RegParallel.Rcheck/tests/runTests.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('RegParallel')
arm (Version 1.10-1, built: 2018-4-12)
Working directory is /home/biocbuild/bbs-3.10-data-experiment/meat/RegParallel.Rcheck/tests
RUNIT TEST PROTOCOL -- Sun Apr 12 13:40:33 2020
***********************************************
Number of test functions: 0
Number of errors: 0
Number of failures: 0
1 Test Suite :
RegParallel RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
1.664 0.104 1.780
RegParallel.Rcheck/RegParallel-Ex.timings
| name | user | system | elapsed | |
| RegParallel | 101.224 | 2.996 | 52.073 | |
| bayesglmParallel | 36.360 | 0.452 | 19.724 | |
| clogitParallel | 6.084 | 0.204 | 3.630 | |
| coxphParallel | 6.900 | 0.252 | 3.531 | |
| glm.nbParallel | 39.092 | 0.568 | 20.814 | |
| glmParallel | 12.744 | 1.584 | 5.565 | |
| lmParallel | 1.684 | 0.180 | 1.115 | |