Package: iChip

Version: 1.40.0

Command: rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iChip_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iChip.buildbin-libdir

StartedAt: 2020-04-15 07:46:02 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 07:47:03 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 60.8 seconds

RetCode: 0

Status:  OK

PackageFile: iChip_1.40.0.tgz

PackageFileSize: 1.835 MiB

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### Running command:
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###   rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iChip_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iChip.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iChip.buildbin-libdir iChip_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package ‘iChip’ ...
** using staged installation
rm: *~: No such file or directory
rm: src/*.o: No such file or directory
rm: src/*.so: No such file or directory
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c iChip.c -o iChip.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iChip.so iChip.o registerDynamicSymbol.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.10-bioc/meat/iChip.buildbin-libdir/00LOCK-iChip/00new/iChip/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iChip)


>>>>>>> 
>>>>>>> FIXING LINKS FOR iChip.buildbin-libdir/iChip/libs//iChip.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "iChip.buildbin-libdir/iChip/libs//iChip.so"