Alex Sanchez
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/goProfiles |
| Branch: RELEASE_3_10 |
| Last Commit: 4aa76ed |
| Last Changed Date: 2019-10-29 13:07:56 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:05:14 -0400 (Wed, 15 Apr 2020).
| Package 723/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| goProfiles 1.48.0 Alex Sanchez
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: goProfiles |
| Version: 1.48.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:goProfiles.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings goProfiles_1.48.0.tar.gz |
| StartedAt: 2020-04-15 00:30:35 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 00:33:22 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 167.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: goProfiles.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:goProfiles.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings goProfiles_1.48.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/goProfiles.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘goProfiles/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘goProfiles’ version ‘1.48.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘goProfiles’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
compareGeneLists 23.276 0.032 23.344
equivalentGOProfiles 17.056 0.020 17.200
fisherGOProfiles 6.640 0.044 6.690
plotProfiles 6.124 0.008 6.143
mergeProfilesLists 5.940 0.008 5.956
printProfiles 5.528 0.004 5.546
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
goProfiles.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL goProfiles ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘goProfiles’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goProfiles)
goProfiles.Rcheck/goProfiles-Ex.timings
| name | user | system | elapsed | |
| CD4ids | 0.004 | 0.000 | 0.003 | |
| GOTermsList | 0.000 | 0.000 | 0.001 | |
| basicProfile | 4.132 | 0.124 | 4.264 | |
| compSummary | 0 | 0 | 0 | |
| compareGOProfiles | 4.376 | 0.020 | 4.398 | |
| compareGeneLists | 23.276 | 0.032 | 23.344 | |
| compareProfilesLists | 0.000 | 0.000 | 0.001 | |
| contractedProfile | 2.472 | 0.000 | 2.494 | |
| conversionFunctions | 0.040 | 0.004 | 0.043 | |
| drosophila | 0.004 | 0.000 | 0.003 | |
| equivClust | 0 | 0 | 0 | |
| equivClust2pdf | 0.028 | 0.004 | 0.030 | |
| equivSummary | 0 | 0 | 0 | |
| equivalentGOProfiles | 17.056 | 0.020 | 17.200 | |
| expandedLevel | 0.900 | 0.004 | 0.972 | |
| expandedProfile | 1.196 | 0.000 | 1.198 | |
| fisherGOProfiles | 6.640 | 0.044 | 6.690 | |
| fitGOProfile | 0 | 0 | 0 | |
| hugoIds | 0.024 | 0.000 | 0.026 | |
| iterEquivClust | 0.000 | 0.000 | 0.001 | |
| mergeProfilesLists | 5.940 | 0.008 | 5.956 | |
| ngenes | 2.528 | 0.012 | 2.549 | |
| omimIds | 0.008 | 0.000 | 0.009 | |
| plotProfiles | 6.124 | 0.008 | 6.143 | |
| printProfiles | 5.528 | 0.004 | 5.546 | |
| prostateIds | 0.004 | 0.000 | 0.004 | |