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INSTALL report for BUSpaRse on tokay1

This page was generated on 2020-04-15 12:33:01 -0400 (Wed, 15 Apr 2020).

Package 211/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BUSpaRse 1.0.0
Lambda Moses
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/BUSpaRse
Branch: RELEASE_3_10
Last Commit: 9b33e52
Last Changed Date: 2019-10-29 13:11:56 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BUSpaRse
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BUSpaRse_1.0.0.tar.gz && rm -rf BUSpaRse.buildbin-libdir && mkdir BUSpaRse.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUSpaRse.buildbin-libdir BUSpaRse_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BUSpaRse_1.0.0.zip && rm BUSpaRse_1.0.0.tar.gz BUSpaRse_1.0.0.zip
StartedAt: 2020-04-14 19:56:38 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:58:23 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 105.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BUSpaRse_1.0.0.tar.gz && rm -rf BUSpaRse.buildbin-libdir && mkdir BUSpaRse.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUSpaRse.buildbin-libdir BUSpaRse_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BUSpaRse_1.0.0.zip && rm BUSpaRse_1.0.0.tar.gz BUSpaRse_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 70833  100 70833    0     0   846k      0 --:--:-- --:--:-- --:--:--  886k

install for i386

* installing *source* package 'BUSpaRse' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -fopenmp  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -fopenmp  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c fill_cell_gene.cpp -o fill_cell_gene.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BUSpaRse.dll tmp.def RcppExports.o fill_cell_gene.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/i386 -ltbb -ltbbmalloc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BUSpaRse.buildbin-libdir/00LOCK-BUSpaRse/00new/BUSpaRse/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BUSpaRse'
    finding HTML links ... done
    EC2gene                                 html  
    annot_circular                          html  
    finding level-2 HTML links ... done

    check_char1                             html  
    check_genome                            html  
    check_gff                               html  
    check_tag_present                       html  
    check_tx                                html  
    dot-get_velocity_files                  html  
    get_intron_flanks                       html  
    get_velocity_files                      html  
    make_sparse_matrix                      html  
    match_style                             html  
    read_count_output                       html  
    read_velocity_output                    html  
    save_tr2g_bustools                      html  
    sort_tr2g                               html  
    species2dataset                         html  
    standardize_tags                        html  
    sub_annot                               html  
    subset_annot                            html  
    tr2g_EnsDb                              html  
    tr2g_GRanges                            html  
    tr2g_TxDb                               html  
    tr2g_ensembl                            html  
    tr2g_fasta                              html  
    tr2g_gff3                               html  
    tr2g_gtf                                html  
    tr2g_junction                           html  
    transcript2gene                         html  
    validate_velocity_input                 html  
    write_velocity_output                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BUSpaRse' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -fopenmp  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppProgress/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -fopenmp  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c fill_cell_gene.cpp -o fill_cell_gene.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BUSpaRse.dll tmp.def RcppExports.o fill_cell_gene.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BUSpaRse.buildbin-libdir/BUSpaRse/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BUSpaRse' as BUSpaRse_1.0.0.zip
* DONE (BUSpaRse)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BUSpaRse' successfully unpacked and MD5 sums checked