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BioC experimental data: CHECK report for CCl4 on moscato2

This page was generated on 2015-10-07 16:21:09 -0700 (Wed, 07 Oct 2015).

Package 30/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CCl4 1.6.0
Audrey Kauffmann
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/CCl4
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: CCl4
Version: 1.6.0
Command: rm -rf CCl4.buildbin-libdir CCl4.Rcheck && mkdir CCl4.buildbin-libdir CCl4.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CCl4.buildbin-libdir CCl4_1.6.0.tar.gz >CCl4.Rcheck\00install.out 2>&1 && cp CCl4.Rcheck\00install.out CCl4-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=CCl4.buildbin-libdir --install="check:CCl4-install.out" --force-multiarch --no-vignettes --timings CCl4_1.6.0.tar.gz
StartedAt: 2015-10-07 09:49:58 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 09:56:23 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 385.2 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: CCl4.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CCl4.buildbin-libdir CCl4.Rcheck && mkdir CCl4.buildbin-libdir CCl4.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CCl4.buildbin-libdir CCl4_1.6.0.tar.gz >CCl4.Rcheck\00install.out 2>&1 && cp CCl4.Rcheck\00install.out CCl4-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=CCl4.buildbin-libdir --install="check:CCl4-install.out" --force-multiarch --no-vignettes --timings CCl4_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/CCl4.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CCl4/DESCRIPTION' ... OK
* this is package 'CCl4' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CCl4' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 304.3Mb
  sub-directories of 1Mb or more:
    data      12.0Mb
    extdata  292.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  CCl4.RData           9.1Mb    2.1Mb       xz
  CCl4_RGList.RData    2.9Mb    2.0Mb       xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'validDataFiles.R' [1s]
  Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,25d4
< Attaching package: 'BiocGenerics'
< 
< The following objects are masked from 'package:parallel':
< 
<     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
<     clusterExport, clusterMap, parApply, parCapply, parLapply,
<     parLapplyLB, parRapply, parSapply, parSapplyLB
< 
< The following object is masked from 'package:stats':
< 
<     xtabs
< 
< The following objects are masked from 'package:base':
< 
<     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
<     as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
<     eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
<     mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
<     rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
<     unique, unlist, unsplit
< 
28,37c7,9
<     Vignettes contain introductory material; view with
<     'browseVignettes()'. To cite Bioconductor, see
<     'citation("Biobase")', and for packages 'citation("pkgname")'.
< 
< 
< Attaching package: 'limma'
< 
< The following object is masked from 'package:BiocGenerics':
< 
<     plotMA
---
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning message:
running command '"diff" -bw "E:\biocbld\bbs-3.1-data-experiment\tmpdir\RtmpmqzPAj\Rdiffa22485c9dd0" "E:\biocbld\bbs-3.1-data-experiment\tmpdir\RtmpmqzPAj\Rdiffb22483b875007"' had status 1 
 [35s] OK
** running tests for arch 'x64' ...
  Running 'validDataFiles.R' [1s]
  Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,25d4
< Attaching package: 'BiocGenerics'
< 
< The following objects are masked from 'package:parallel':
< 
<     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
<     clusterExport, clusterMap, parApply, parCapply, parLapply,
<     parLapplyLB, parRapply, parSapply, parSapplyLB
< 
< The following object is masked from 'package:stats':
< 
<     xtabs
< 
< The following objects are masked from 'package:base':
< 
<     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
<     as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
<     eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
<     mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
<     rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
<     unique, unlist, unsplit
< 
28,37c7,9
<     Vignettes contain introductory material; view with
<     'browseVignettes()'. To cite Bioconductor, see
<     'citation("Biobase")', and for packages 'citation("pkgname")'.
< 
< 
< Attaching package: 'limma'
< 
< The following object is masked from 'package:BiocGenerics':
< 
<     plotMA
---
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning message:
running command '"diff" -bw "E:\biocbld\bbs-3.1-data-experiment\tmpdir\Rtmpe4nCml\Rdiffa22087e9325d4" "E:\biocbld\bbs-3.1-data-experiment\tmpdir\Rtmpe4nCml\Rdiffb2208ce1320f"' had status 1 
 [2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'E:/biocbld/bbs-3.1-data-experiment/meat/CCl4.Rcheck/00check.log'
for details.


CCl4.Rcheck/00install.out:


install for i386

* installing *source* package 'CCl4' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CCl4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CCl4' as CCl4_1.6.0.zip
* DONE (CCl4)

CCl4.Rcheck/examples_i386/CCl4-Ex.timings:

nameusersystemelapsed
CCl41.060.001.06

CCl4.Rcheck/examples_x64/CCl4-Ex.timings:

nameusersystemelapsed
CCl41.200.021.22