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BioC experimental data: CHECK report for miRNATarget on moscato1

This page was generated on 2015-04-08 17:41:07 -0700 (Wed, 08 Apr 2015).

Package 145/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.3.1
Y-h. Taguchi
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/miRNATarget
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: miRNATarget
Version: 1.3.1
Command: rm -rf miRNATarget.buildbin-libdir miRNATarget.Rcheck && mkdir miRNATarget.buildbin-libdir miRNATarget.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNATarget.buildbin-libdir miRNATarget_1.3.1.tar.gz >miRNATarget.Rcheck\00install.out 2>&1 && cp miRNATarget.Rcheck\00install.out miRNATarget-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=miRNATarget.buildbin-libdir --install="check:miRNATarget-install.out" --force-multiarch --no-vignettes --timings miRNATarget_1.3.1.tar.gz
StartedAt: 2015-04-08 11:09:59 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 11:16:17 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 378.3 seconds
RetCode: 0
Status:  OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf miRNATarget.buildbin-libdir miRNATarget.Rcheck && mkdir miRNATarget.buildbin-libdir miRNATarget.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNATarget.buildbin-libdir miRNATarget_1.3.1.tar.gz >miRNATarget.Rcheck\00install.out 2>&1 && cp miRNATarget.Rcheck\00install.out miRNATarget-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=miRNATarget.buildbin-libdir --install="check:miRNATarget-install.out" --force-multiarch --no-vignettes --timings miRNATarget_1.3.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/miRNATarget.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '1.3.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'miRNATarget' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.7Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [46s] OK
** running examples for arch 'x64' ... [16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-3.0-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.

miRNATarget.Rcheck/00install.out:


install for i386

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'miRNATarget' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRNATarget' as miRNATarget_1.3.1.zip
* DONE (miRNATarget)

miRNATarget.Rcheck/examples_i386/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.040.000.03
HS_refseq_to_affy_hc_g110000
HS_refseq_to_affy_hg_focus0.030.000.04
HS_refseq_to_affy_hg_u133_plus_20.100.000.09
HS_refseq_to_affy_hg_u133a0.040.000.05
HS_refseq_to_affy_hg_u133a_20.050.000.05
HS_refseq_to_affy_hg_u133b0.030.000.03
HS_refseq_to_affy_hg_u95a0.070.000.08
HS_refseq_to_affy_hg_u95av20.040.000.03
HS_refseq_to_affy_hg_u95b0.010.020.03
HS_refseq_to_affy_hg_u95c0.020.000.02
HS_refseq_to_affy_hg_u95d0.010.000.01
HS_refseq_to_affy_hg_u95e0.020.000.02
HS_refseq_to_affy_huex_1_0_st_v21.950.011.96
HS_refseq_to_affy_hugene_1_0_st_v10.060.000.06
HS_refseq_to_affy_hugenefl0.010.000.02
HS_refseq_to_affy_u133_x3p0.110.000.11
HS_refseq_to_agilent_cgh_44b0.020.020.03
HS_refseq_to_agilent_wholegenome0.260.000.26
HS_refseq_to_canonical_transcript_stable_id0.10.00.1
HS_refseq_to_ccds0.040.000.04
HS_refseq_to_codelink0.050.020.07
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.000.010.01
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2000
HS_refseq_to_embl1.090.022.26
HS_refseq_to_ensembl_exon_id000
HS_refseq_to_ensembl_gene_id0.080.000.08
HS_refseq_to_ensembl_peptide_id0.110.000.11
HS_refseq_to_ensembl_transcript_id0.250.000.25
HS_refseq_to_entrezgene0.070.000.06
HS_refseq_to_hgnc_id0.070.000.08
HS_refseq_to_hgnc_symbol0.070.000.06
HS_refseq_to_hgnc_transcript_name0.060.000.06
HS_refseq_to_illumina_humanht_120.060.000.06
HS_refseq_to_illumina_humanwg_6_v10.060.000.05
HS_refseq_to_illumina_humanwg_6_v20.050.000.05
HS_refseq_to_illumina_humanwg_6_v30.060.000.06
HS_refseq_to_interpro0.160.010.17
HS_refseq_to_ipi0.140.020.16
HS_refseq_to_merops0.000.010.01
HS_refseq_to_pdb0.120.000.13
HS_refseq_to_pfam0.090.000.09
HS_refseq_to_phalanx_onearray0.050.020.06
HS_refseq_to_protein_id1.620.011.64
HS_refseq_to_refseq_dna0.080.000.08
HS_refseq_to_refseq_genomic0.000.000.02
HS_refseq_to_refseq_peptide0.140.000.14
HS_refseq_to_rfam0.000.000.01
HS_refseq_to_rfam_gene_name000
HS_refseq_to_rfam_transcript_name000
HS_refseq_to_smart0.040.020.06
HS_refseq_to_tigrfam0.020.000.02
HS_refseq_to_ucsc0.120.000.12
HS_refseq_to_unigene0.180.000.18
HS_refseq_to_uniprot_genename0.20.00.2
HS_refseq_to_uniprot_genename_transcript_name0.010.000.01
HS_refseq_to_uniprot_sptrembl000
HS_refseq_to_uniprot_swissprot0.000.020.02
HS_refseq_to_uniprot_swissprot_accession000
HS_refseq_to_wikigene_id0.020.000.02
HS_refseq_to_wikigene_name0.060.000.06
MM_conv_id000
MM_refseq_to_affy_mg_u74a0.020.010.03
MM_refseq_to_affy_mg_u74av20.030.000.03
MM_refseq_to_affy_mg_u74b0.010.000.02
MM_refseq_to_affy_mg_u74bv20.020.000.01
MM_refseq_to_affy_mg_u74c0.000.020.02
MM_refseq_to_affy_mg_u74cv20.020.000.01
MM_refseq_to_affy_moe430a0.040.000.05
MM_refseq_to_affy_moe430b0.020.000.02
MM_refseq_to_affy_moex_1_0_st_v10.540.000.54
MM_refseq_to_affy_mogene_1_0_st_v10.050.000.05
MM_refseq_to_affy_mouse430_20.080.000.07
MM_refseq_to_affy_mouse430a_20.050.000.04
MM_refseq_to_affy_mu11ksuba0.010.000.02
MM_refseq_to_affy_mu11ksubb0.020.000.01
MM_refseq_to_agilent_wholegenome0.120.000.13
MM_refseq_to_canonical_transcript_stable_id0.080.000.08
MM_refseq_to_ccds0.050.000.05
MM_refseq_to_codelink0.040.000.05
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.020.000.01
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2000
MM_refseq_to_embl0.400.000.41
MM_refseq_to_ensembl_exon_id000
MM_refseq_to_ensembl_gene_id0.050.020.06
MM_refseq_to_ensembl_peptide_id0.130.000.12
MM_refseq_to_ensembl_transcript_id0.040.000.05
MM_refseq_to_entrezgene0.050.010.06
MM_refseq_to_fantom0.360.000.36
MM_refseq_to_illumina_mousewg_6_v10.080.000.08
MM_refseq_to_illumina_mousewg_6_v20.060.000.06
MM_refseq_to_interpro0.30.00.3
MM_refseq_to_ipi000
MM_refseq_to_merops0.010.000.02
MM_refseq_to_mgi_id0.050.000.04
MM_refseq_to_mgi_symbol0.040.000.05
MM_refseq_to_mgi_transcript_name0.050.000.05
MM_refseq_to_pdb0.020.000.01
MM_refseq_to_pfam0.080.000.08
MM_refseq_to_phalanx_onearray0.030.020.05
MM_refseq_to_protein_id0.340.020.35
MM_refseq_to_refseq_dna0.060.000.07
MM_refseq_to_refseq_peptide0.100.000.09
MM_refseq_to_rfam000
MM_refseq_to_rfam_gene_name0.000.010.02
MM_refseq_to_rfam_transcript_name000
MM_refseq_to_smart0.090.000.09
MM_refseq_to_tigrfam000
MM_refseq_to_ucsc0.050.000.04
MM_refseq_to_unigene0.050.020.06
MM_refseq_to_uniprot_genename0.040.000.03
MM_refseq_to_uniprot_genename_transcript_name000
MM_refseq_to_uniprot_sptrembl000
MM_refseq_to_uniprot_swissprot0.020.000.01
MM_refseq_to_uniprot_swissprot_accession000
MM_refseq_to_wikigene_id0.000.010.02
MM_refseq_to_wikigene_name0.040.000.05
TBL21.080.081.15
TBL2_HS1.780.201.98
TBL2_MM1.030.071.09
conv_id0.010.000.02
id_conv0.050.000.05

miRNATarget.Rcheck/examples_x64/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.020.010.03
HS_refseq_to_affy_hc_g110000
HS_refseq_to_affy_hg_focus0.010.020.03
HS_refseq_to_affy_hg_u133_plus_20.080.000.08
HS_refseq_to_affy_hg_u133a0.050.000.05
HS_refseq_to_affy_hg_u133a_20.050.000.04
HS_refseq_to_affy_hg_u133b0.030.000.04
HS_refseq_to_affy_hg_u95a0.030.000.03
HS_refseq_to_affy_hg_u95av20.020.000.02
HS_refseq_to_affy_hg_u95b0.030.000.03
HS_refseq_to_affy_hg_u95c0.020.000.01
HS_refseq_to_affy_hg_u95d0.020.000.02
HS_refseq_to_affy_hg_u95e0.010.000.01
HS_refseq_to_affy_huex_1_0_st_v21.660.031.69
HS_refseq_to_affy_hugene_1_0_st_v10.040.000.04
HS_refseq_to_affy_hugenefl0.020.000.02
HS_refseq_to_affy_u133_x3p0.090.000.09
HS_refseq_to_agilent_cgh_44b0.020.000.02
HS_refseq_to_agilent_wholegenome0.20.00.2
HS_refseq_to_canonical_transcript_stable_id0.080.000.08
HS_refseq_to_ccds0.040.000.04
HS_refseq_to_codelink0.050.000.05
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.020.000.02
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2000
HS_refseq_to_embl0.670.020.68
HS_refseq_to_ensembl_exon_id000
HS_refseq_to_ensembl_gene_id0.060.000.06
HS_refseq_to_ensembl_peptide_id0.050.000.04
HS_refseq_to_ensembl_transcript_id0.140.010.16
HS_refseq_to_entrezgene0.060.000.06
HS_refseq_to_hgnc_id0.030.030.07
HS_refseq_to_hgnc_symbol0.070.000.06
HS_refseq_to_hgnc_transcript_name0.060.000.06
HS_refseq_to_illumina_humanht_120.060.000.06
HS_refseq_to_illumina_humanwg_6_v10.060.000.07
HS_refseq_to_illumina_humanwg_6_v20.050.000.04
HS_refseq_to_illumina_humanwg_6_v30.060.000.06
HS_refseq_to_interpro0.190.020.21
HS_refseq_to_ipi0.170.000.17
HS_refseq_to_merops0.020.000.01
HS_refseq_to_pdb0.090.000.10
HS_refseq_to_pfam0.080.010.09
HS_refseq_to_phalanx_onearray0.050.000.05
HS_refseq_to_protein_id1.400.021.42
HS_refseq_to_refseq_dna0.060.000.06
HS_refseq_to_refseq_genomic000
HS_refseq_to_refseq_peptide0.130.000.13
HS_refseq_to_rfam0.030.010.04
HS_refseq_to_rfam_gene_name000
HS_refseq_to_rfam_transcript_name000
HS_refseq_to_smart0.040.000.05
HS_refseq_to_tigrfam0.000.020.01
HS_refseq_to_ucsc0.050.000.05
HS_refseq_to_unigene0.120.000.12
HS_refseq_to_uniprot_genename0.170.020.19
HS_refseq_to_uniprot_genename_transcript_name000
HS_refseq_to_uniprot_sptrembl000
HS_refseq_to_uniprot_swissprot0.000.010.02
HS_refseq_to_uniprot_swissprot_accession000
HS_refseq_to_wikigene_id0.010.000.02
HS_refseq_to_wikigene_name0.050.000.04
MM_conv_id0.020.000.02
MM_refseq_to_affy_mg_u74a0.010.000.01
MM_refseq_to_affy_mg_u74av20.020.000.02
MM_refseq_to_affy_mg_u74b0.020.000.02
MM_refseq_to_affy_mg_u74bv20.020.000.02
MM_refseq_to_affy_mg_u74c000
MM_refseq_to_affy_mg_u74cv20.000.020.01
MM_refseq_to_affy_moe430a0.040.000.05
MM_refseq_to_affy_moe430b0.020.000.01
MM_refseq_to_affy_moex_1_0_st_v10.430.000.44
MM_refseq_to_affy_mogene_1_0_st_v10.050.000.05
MM_refseq_to_affy_mouse430_20.050.010.06
MM_refseq_to_affy_mouse430a_20.030.000.03
MM_refseq_to_affy_mu11ksuba0.000.020.02
MM_refseq_to_affy_mu11ksubb0.000.010.01
MM_refseq_to_agilent_wholegenome0.060.000.06
MM_refseq_to_canonical_transcript_stable_id0.060.000.07
MM_refseq_to_ccds0.050.000.04
MM_refseq_to_codelink0.030.000.04
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.020.000.01
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2000
MM_refseq_to_embl0.370.020.39
MM_refseq_to_ensembl_exon_id0.020.000.02
MM_refseq_to_ensembl_gene_id0.040.000.04
MM_refseq_to_ensembl_peptide_id0.040.000.03
MM_refseq_to_ensembl_transcript_id0.030.020.05
MM_refseq_to_entrezgene0.040.000.05
MM_refseq_to_fantom0.110.000.11
MM_refseq_to_illumina_mousewg_6_v10.030.010.04
MM_refseq_to_illumina_mousewg_6_v20.070.000.07
MM_refseq_to_interpro0.130.000.13
MM_refseq_to_ipi000
MM_refseq_to_merops0.010.000.02
MM_refseq_to_mgi_id0.050.000.04
MM_refseq_to_mgi_symbol0.20.00.2
MM_refseq_to_mgi_transcript_name0.050.000.05
MM_refseq_to_pdb0.020.000.02
MM_refseq_to_pfam0.070.000.08
MM_refseq_to_phalanx_onearray0.050.000.07
MM_refseq_to_protein_id0.330.000.33
MM_refseq_to_refseq_dna0.060.000.06
MM_refseq_to_refseq_peptide0.170.000.17
MM_refseq_to_rfam000
MM_refseq_to_rfam_gene_name000
MM_refseq_to_rfam_transcript_name000
MM_refseq_to_smart0.030.000.03
MM_refseq_to_tigrfam000
MM_refseq_to_ucsc0.150.000.15
MM_refseq_to_unigene0.060.000.07
MM_refseq_to_uniprot_genename0.240.020.25
MM_refseq_to_uniprot_genename_transcript_name0.000.010.01
MM_refseq_to_uniprot_sptrembl000
MM_refseq_to_uniprot_swissprot0.010.000.02
MM_refseq_to_uniprot_swissprot_accession000
MM_refseq_to_wikigene_id000
MM_refseq_to_wikigene_name0.030.000.03
TBL21.050.051.10
TBL2_HS1.810.051.85
TBL2_MM0.920.071.00
conv_id000
id_conv0.040.000.05