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BioC experimental data: CHECK report for Affyhgu133Plus2Expr on moscato1

This page was generated on 2015-04-08 17:41:16 -0700 (Wed, 08 Apr 2015).

Package 5/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Affyhgu133Plus2Expr 1.0.1
Zhicheng Ji
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/Affyhgu133Plus2Expr
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: Affyhgu133Plus2Expr
Version: 1.0.1
Command: rm -rf Affyhgu133Plus2Expr.buildbin-libdir Affyhgu133Plus2Expr.Rcheck && mkdir Affyhgu133Plus2Expr.buildbin-libdir Affyhgu133Plus2Expr.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Affyhgu133Plus2Expr.buildbin-libdir Affyhgu133Plus2Expr_1.0.1.tar.gz >Affyhgu133Plus2Expr.Rcheck\00install.out 2>&1 && cp Affyhgu133Plus2Expr.Rcheck\00install.out Affyhgu133Plus2Expr-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=Affyhgu133Plus2Expr.buildbin-libdir --install="check:Affyhgu133Plus2Expr-install.out" --force-multiarch --no-vignettes --timings Affyhgu133Plus2Expr_1.0.1.tar.gz
StartedAt: 2015-04-08 08:59:46 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 09:03:36 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 230.1 seconds
RetCode: 0
Status:  OK  
CheckDir: Affyhgu133Plus2Expr.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf Affyhgu133Plus2Expr.buildbin-libdir Affyhgu133Plus2Expr.Rcheck && mkdir Affyhgu133Plus2Expr.buildbin-libdir Affyhgu133Plus2Expr.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Affyhgu133Plus2Expr.buildbin-libdir Affyhgu133Plus2Expr_1.0.1.tar.gz >Affyhgu133Plus2Expr.Rcheck\00install.out 2>&1 && cp Affyhgu133Plus2Expr.Rcheck\00install.out Affyhgu133Plus2Expr-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=Affyhgu133Plus2Expr.buildbin-libdir --install="check:Affyhgu133Plus2Expr-install.out" --force-multiarch --no-vignettes --timings Affyhgu133Plus2Expr_1.0.1.tar.gz
###
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##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/Affyhgu133Plus2Expr.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Affyhgu133Plus2Expr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Affyhgu133Plus2Expr' version '1.0.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Affyhgu133Plus2Expr' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 226.5Mb
  sub-directories of 1Mb or more:
    extdata  226.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-data-experiment/meat/Affyhgu133Plus2Expr.Rcheck/00check.log'
for details.

Affyhgu133Plus2Expr.Rcheck/00install.out:


install for i386

* installing *source* package 'Affyhgu133Plus2Expr' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'Affyhgu133Plus2Expr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Affyhgu133Plus2Expr' as Affyhgu133Plus2Expr_1.0.1.zip
* DONE (Affyhgu133Plus2Expr)

Affyhgu133Plus2Expr.Rcheck/examples_i386/Affyhgu133Plus2Expr-Ex.timings:

nameusersystemelapsed
Affyhgu133Plus2Exprtab0.050.000.04

Affyhgu133Plus2Expr.Rcheck/examples_x64/Affyhgu133Plus2Expr-Ex.timings:

nameusersystemelapsed
Affyhgu133Plus2Exprtab0.030.000.09