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BioC experimental data: CHECK report for shinyMethylData on perceval

This page was generated on 2015-04-08 17:41:43 -0700 (Wed, 08 Apr 2015).

Package 191/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
shinyMethylData 1.0.0
Jean-Philippe Fortin
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/shinyMethylData
Last Changed Rev: 3139 / Revision: 3266
Last Changed Date: 2014-12-01 21:33:32 -0800 (Mon, 01 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: shinyMethylData
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch shinyMethylData_1.0.0.tar.gz
StartedAt: 2015-04-08 10:36:35 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 10:37:29 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 53.6 seconds
RetCode: 0
Status:  OK 
CheckDir: shinyMethylData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch shinyMethylData_1.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/shinyMethylData.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘shinyMethylData/DESCRIPTION’ ... OK
* this is package ‘shinyMethylData’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘shinyMethylData’ can be installed ... [26s/28s] OK
* checking installed package size ... NOTE
  installed size is 47.7Mb
  sub-directories of 1Mb or more:
    data  47.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘shinyMethyl’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'shinyMethyl'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... OK
* DONE

NOTE: There were 3 notes.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/shinyMethylData.Rcheck/00check.log’
for details.

shinyMethylData.Rcheck/00install.out:

* installing *source* package ‘shinyMethylData’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (shinyMethylData)

shinyMethylData.Rcheck/shinyMethylData-Ex.timings:

nameusersystemelapsed
summary.tcga.norm0.0260.0040.030
summary.tcga.raw0.0010.0000.002