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BioC experimental data: CHECK report for geneLenDataBase on perceval

This page was generated on 2015-04-08 17:41:26 -0700 (Wed, 08 Apr 2015).

Package 90/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.1.1
Matthew Young , Nadia Davidson
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ WARNINGS ] OK 

Summary

Package: geneLenDataBase
Version: 1.1.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch geneLenDataBase_1.1.1.tar.gz
StartedAt: 2015-04-08 09:54:50 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 10:09:50 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 900.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch geneLenDataBase_1.1.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [38s/81s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [111s/113s] OK
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.

geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.1310.0090.142
anoCar1.genscan.LENGTH0.0720.0050.077
anoCar1.xenoRefGene.LENGTH2.3580.0262.395
anoGam1.ensGene.LENGTH0.6760.0040.681
anoGam1.geneid.LENGTH0.0590.0010.061
anoGam1.genscan.LENGTH0.0560.0010.057
apiMel1.genscan.LENGTH0.0490.0010.050
apiMel2.ensGene.LENGTH0.1080.0050.114
apiMel2.geneid.LENGTH0.0640.0020.065
apiMel2.genscan.LENGTH0.0460.0020.048
aplCal1.xenoRefGene.LENGTH0.7130.0040.722
bosTau2.geneSymbol.LENGTH0.0540.0010.056
bosTau2.geneid.LENGTH1.1450.0111.162
bosTau2.genscan.LENGTH0.1160.0020.119
bosTau2.refGene.LENGTH0.1060.0020.110
bosTau2.sgpGene.LENGTH0.1490.0030.153
bosTau3.ensGene.LENGTH0.2670.0060.274
bosTau3.geneSymbol.LENGTH0.6120.0020.617
bosTau3.geneid.LENGTH0.1550.0020.160
bosTau3.genscan.LENGTH0.0990.0020.102
bosTau3.refGene.LENGTH0.0440.0020.046
bosTau3.sgpGene.LENGTH0.1200.0030.123
bosTau4.ensGene.LENGTH0.1350.0030.139
bosTau4.geneSymbol.LENGTH0.0440.0010.046
bosTau4.genscan.LENGTH0.1650.0050.171
bosTau4.nscanGene.LENGTH0.0450.0020.046
bosTau4.refGene.LENGTH0.0440.0010.046
braFlo1.xenoRefGene.LENGTH0.7370.0080.751
caeJap1.xenoRefGene.LENGTH1.1490.0081.201
caePb1.xenoRefGene.LENGTH0.6940.0090.709
caePb2.xenoRefGene.LENGTH0.7700.0080.782
caeRem2.xenoRefGene.LENGTH0.6310.0050.636
caeRem3.xenoRefGene.LENGTH0.6150.0060.625
calJac1.genscan.LENGTH0.1220.0030.125
calJac1.nscanGene.LENGTH0.1720.0040.176
calJac1.xenoRefGene.LENGTH2.0940.0122.121
canFam1.ensGene.LENGTH0.1670.0020.169
canFam1.geneSymbol.LENGTH0.0120.0010.013
canFam1.genscan.LENGTH0.0870.0020.090
canFam1.nscanGene.LENGTH0.0930.0020.391
canFam1.refGene.LENGTH0.0100.0010.012
canFam1.xenoRefGene.LENGTH1.8880.0101.899
canFam2.ensGene.LENGTH0.1360.0020.139
canFam2.geneSymbol.LENGTH0.0110.0010.012
canFam2.genscan.LENGTH0.0920.0020.095
canFam2.nscanGene.LENGTH0.1010.0020.103
canFam2.refGene.LENGTH0.0110.0010.013
canFam2.xenoRefGene.LENGTH1.0430.0071.052
cavPor3.ensGene.LENGTH0.1410.0020.143
cavPor3.genscan.LENGTH0.2560.0030.260
cavPor3.nscanGene.LENGTH0.1020.0050.108
cavPor3.xenoRefGene.LENGTH1.6800.0081.693
cb1.xenoRefGene.LENGTH0.6790.0050.688
cb3.xenoRefGene.LENGTH0.5670.0070.578
ce2.geneSymbol.LENGTH0.1000.0020.102
ce2.geneid.LENGTH0.0940.0010.096
ce2.refGene.LENGTH0.0930.0020.094
ce4.geneSymbol.LENGTH0.1040.0020.106
ce4.refGene.LENGTH0.0930.0030.096
ce4.xenoRefGene.LENGTH0.1770.0030.180
ce6.ensGene.LENGTH0.1440.0020.146
ce6.geneSymbol.LENGTH0.0910.0020.094
ce6.refGene.LENGTH0.0850.0030.088
ce6.xenoRefGene.LENGTH0.0980.0020.101
ci1.geneSymbol.LENGTH0.0100.0010.011
ci1.refGene.LENGTH0.0080.0010.009
ci1.xenoRefGene.LENGTH0.2050.0020.208
ci2.ensGene.LENGTH0.1340.0040.138
ci2.geneSymbol.LENGTH0.0100.0010.010
ci2.refGene.LENGTH0.0090.0010.009
ci2.xenoRefGene.LENGTH0.3450.0040.350
danRer3.ensGene.LENGTH0.1240.0020.126
danRer3.geneSymbol.LENGTH0.1430.0020.146
danRer3.refGene.LENGTH0.0640.0010.065
danRer4.ensGene.LENGTH0.1440.0020.146
danRer4.geneSymbol.LENGTH0.0710.0010.073
danRer4.genscan.LENGTH0.2500.0050.256
danRer4.nscanGene.LENGTH0.1280.0010.131
danRer4.refGene.LENGTH0.0750.0020.078
danRer5.ensGene.LENGTH0.2080.0030.212
danRer5.geneSymbol.LENGTH0.0740.0010.075
danRer5.refGene.LENGTH0.0640.0010.066
danRer5.vegaGene.LENGTH0.0730.0030.076
danRer5.vegaPseudoGene.LENGTH0.0070.0010.008
danRer6.ensGene.LENGTH0.1760.0050.181
danRer6.geneSymbol.LENGTH0.0910.0020.093
danRer6.refGene.LENGTH0.0660.0020.069
danRer6.xenoRefGene.LENGTH0.9960.0111.008
dm1.geneSymbol.LENGTH0.1100.0020.113
dm1.genscan.LENGTH0.2670.0030.270
dm1.refGene.LENGTH0.0900.0020.094
dm2.geneSymbol.LENGTH0.1020.0020.105
dm2.geneid.LENGTH0.0680.0020.070
dm2.genscan.LENGTH0.0440.0020.046
dm2.nscanGene.LENGTH0.0960.0030.100
dm2.refGene.LENGTH0.1190.0040.122
dm3.geneSymbol.LENGTH0.1030.0030.106
dm3.nscanPasaGene.LENGTH0.0860.0040.090
dm3.refGene.LENGTH0.0890.0020.092
dp2.genscan.LENGTH0.1710.0030.174
dp2.xenoRefGene.LENGTH0.3460.0050.350
dp3.geneid.LENGTH0.0690.0020.072
dp3.genscan.LENGTH0.0450.0040.049
dp3.xenoRefGene.LENGTH1.1060.0041.112
droAna1.geneid.LENGTH0.0980.0020.100
droAna1.genscan.LENGTH0.0320.0010.033
droAna1.xenoRefGene.LENGTH0.2700.0040.276
droAna2.genscan.LENGTH0.0650.0010.066
droAna2.xenoRefGene.LENGTH0.4410.0070.449
droEre1.genscan.LENGTH0.0450.0020.047
droEre1.xenoRefGene.LENGTH0.4220.0070.432
droGri1.genscan.LENGTH0.1170.0030.121
droGri1.xenoRefGene.LENGTH0.4320.0050.438
droMoj1.geneid.LENGTH0.1750.0020.177
droMoj1.genscan.LENGTH0.0800.0030.084
droMoj1.xenoRefGene.LENGTH0.3790.0030.385
droMoj2.genscan.LENGTH0.1240.0030.127
droMoj2.xenoRefGene.LENGTH0.4050.0050.413
droPer1.genscan.LENGTH0.0600.0010.061
droPer1.xenoRefGene.LENGTH0.4330.0040.440
droSec1.genscan.LENGTH0.0450.0010.047
droSec1.xenoRefGene.LENGTH0.5130.0030.520
droSim1.geneid.LENGTH0.0660.0020.069
droSim1.genscan.LENGTH0.0410.0010.042
droSim1.xenoRefGene.LENGTH0.3860.0040.390
droVir1.geneid.LENGTH0.2040.0020.206
droVir1.genscan.LENGTH0.0640.0020.065
droVir1.xenoRefGene.LENGTH0.9510.0040.956
droVir2.genscan.LENGTH0.0510.0010.052
droVir2.xenoRefGene.LENGTH0.4220.0030.428
droYak1.geneid.LENGTH0.0640.0010.065
droYak1.genscan.LENGTH0.0430.0010.044
droYak1.xenoRefGene.LENGTH0.2930.0050.300
droYak2.genscan.LENGTH0.0400.0010.042
droYak2.xenoRefGene.LENGTH0.5000.0070.510
equCab1.geneSymbol.LENGTH0.0100.0010.010
equCab1.geneid.LENGTH0.1280.0020.130
equCab1.nscanGene.LENGTH0.0670.0020.069
equCab1.refGene.LENGTH0.0110.0010.012
equCab1.sgpGene.LENGTH0.1340.0030.137
equCab2.ensGene.LENGTH0.1780.0030.180
equCab2.geneSymbol.LENGTH0.0130.0010.014
equCab2.nscanGene.LENGTH0.0910.0020.094
equCab2.refGene.LENGTH0.0140.0020.016
equCab2.xenoRefGene.LENGTH1.2470.0101.267
felCat3.ensGene.LENGTH0.1600.0020.162
felCat3.geneSymbol.LENGTH0.0090.0010.010
felCat3.geneid.LENGTH1.4280.0271.468
felCat3.genscan.LENGTH0.5280.0040.534
felCat3.nscanGene.LENGTH0.1250.0030.129
felCat3.refGene.LENGTH0.0080.0010.009
felCat3.sgpGene.LENGTH0.9850.0040.996
felCat3.xenoRefGene.LENGTH1.7440.0231.771
fr1.ensGene.LENGTH0.7610.0080.776
fr1.genscan.LENGTH0.0840.0050.122
fr2.ensGene.LENGTH0.1820.0040.191
galGal2.ensGene.LENGTH0.0890.0030.100
galGal2.geneSymbol.LENGTH0.0260.0010.029
galGal2.geneid.LENGTH0.0610.0020.063
galGal2.genscan.LENGTH0.0780.0030.082
galGal2.refGene.LENGTH0.0230.0020.024
galGal2.sgpGene.LENGTH0.0730.0030.079
galGal3.ensGene.LENGTH0.1110.0030.120
galGal3.geneSymbol.LENGTH0.0250.0020.027
galGal3.genscan.LENGTH0.0730.0030.083
galGal3.nscanGene.LENGTH0.0960.0020.099
galGal3.refGene.LENGTH0.0210.0020.023
galGal3.xenoRefGene.LENGTH0.8640.0160.897
gasAcu1.ensGene.LENGTH0.1460.0010.148
gasAcu1.nscanGene.LENGTH0.2850.0040.294
hg16.acembly.LENGTH0.7960.0110.822
hg16.ensGene.LENGTH0.1200.0020.122
hg16.exoniphy.LENGTH1.5190.0151.547
hg16.geneSymbol.LENGTH0.1460.0010.149
hg16.geneid.LENGTH0.0840.0020.086
hg16.genscan.LENGTH0.0820.0010.084
hg16.knownGene.LENGTH0.2050.0030.208
hg16.refGene.LENGTH0.1190.0020.121
hg16.sgpGene.LENGTH0.0870.0020.089
hg17.acembly.LENGTH1.4400.0091.453
hg17.acescan.LENGTH0.0190.0010.020
hg17.ccdsGene.LENGTH0.0420.0010.044
hg17.ensGene.LENGTH0.1760.0020.182
hg17.exoniphy.LENGTH0.6760.0100.704
hg17.geneSymbol.LENGTH0.1250.0020.127
hg17.geneid.LENGTH0.8200.0050.834
hg17.genscan.LENGTH0.0850.0050.090
hg17.knownGene.LENGTH0.1340.0060.141
hg17.refGene.LENGTH0.1150.0050.121
hg17.sgpGene.LENGTH0.0970.0050.102
hg17.vegaGene.LENGTH0.0520.0040.056
hg17.vegaPseudoGene.LENGTH0.0240.0030.027
hg17.xenoRefGene.LENGTH0.2630.0040.267
hg18.acembly.LENGTH0.9240.0120.964
hg18.acescan.LENGTH0.0160.0000.017
hg18.ccdsGene.LENGTH0.0490.0010.050
hg18.ensGene.LENGTH0.6480.0050.664
hg18.exoniphy.LENGTH1.4470.0081.461
hg18.geneSymbol.LENGTH0.1300.0030.132
hg18.geneid.LENGTH0.1070.0010.108
hg18.genscan.LENGTH0.0810.0020.083
hg18.knownGene.LENGTH0.1990.0040.203
hg18.knownGeneOld3.LENGTH0.1030.0040.118
hg18.refGene.LENGTH0.1240.0030.129
hg18.sgpGene.LENGTH0.1110.0030.116
hg18.sibGene.LENGTH0.8380.0140.865
hg18.xenoRefGene.LENGTH1.3830.0081.397
hg19.ccdsGene.LENGTH0.0560.0020.059
hg19.ensGene.LENGTH0.4070.0030.410
hg19.exoniphy.LENGTH0.5280.0080.539
hg19.geneSymbol.LENGTH0.1390.0050.145
hg19.knownGene.LENGTH0.4280.0070.439
hg19.nscanGene.LENGTH0.2060.0070.213
hg19.refGene.LENGTH0.1260.0030.128
hg19.xenoRefGene.LENGTH0.5240.0050.532
loxAfr3.xenoRefGene.LENGTH1.3610.0151.385
mm7.ensGene.LENGTH0.5290.0070.540
mm7.geneSymbol.LENGTH0.1250.0030.130
mm7.geneid.LENGTH0.1270.0020.129
mm7.genscan.LENGTH0.0960.0020.099
mm7.knownGene.LENGTH0.1320.0020.135
mm7.refGene.LENGTH0.1200.0030.123
mm7.sgpGene.LENGTH0.1140.0030.118
mm7.xenoRefGene.LENGTH0.6860.0110.706
mm8.ccdsGene.LENGTH0.0380.0010.039
mm8.ensGene.LENGTH0.1250.0010.126
mm8.geneSymbol.LENGTH0.1470.0020.149
mm8.geneid.LENGTH0.4000.0040.410
mm8.genscan.LENGTH0.1090.0020.112
mm8.knownGene.LENGTH0.1330.0020.135
mm8.nscanGene.LENGTH0.0920.0020.095
mm8.refGene.LENGTH0.1170.0020.120
mm8.sgpGene.LENGTH0.1160.0020.119
mm8.sibGene.LENGTH1.2060.0101.225
mm8.xenoRefGene.LENGTH0.4910.0090.505
mm9.acembly.LENGTH0.4230.0080.434
mm9.ccdsGene.LENGTH0.0470.0020.049
mm9.ensGene.LENGTH0.4750.0050.484
mm9.exoniphy.LENGTH0.9330.0070.941
mm9.geneSymbol.LENGTH0.1470.0030.151
mm9.geneid.LENGTH1.0620.0041.074
mm9.genscan.LENGTH0.0870.0020.090
mm9.knownGene.LENGTH0.1470.0030.149
mm9.nscanGene.LENGTH0.0870.0030.090
mm9.refGene.LENGTH0.1120.0030.116
mm9.sgpGene.LENGTH0.1220.0030.125
mm9.xenoRefGene.LENGTH0.5810.0050.589
monDom1.genscan.LENGTH0.0890.0030.093
monDom4.ensGene.LENGTH0.1460.0030.151
monDom4.geneSymbol.LENGTH0.0080.0010.009
monDom4.genscan.LENGTH0.0770.0030.081
monDom4.nscanGene.LENGTH0.0810.0030.084
monDom4.refGene.LENGTH0.0090.0010.010
monDom4.xenoRefGene.LENGTH0.8070.0130.855
monDom5.ensGene.LENGTH0.1560.0020.161
monDom5.geneSymbol.LENGTH0.0080.0000.009
monDom5.genscan.LENGTH0.0820.0020.084
monDom5.nscanGene.LENGTH0.1540.0030.157
monDom5.refGene.LENGTH0.0080.0010.008
monDom5.xenoRefGene.LENGTH1.6370.0101.666
ornAna1.ensGene.LENGTH0.1450.0020.148
ornAna1.geneSymbol.LENGTH0.0080.0010.009
ornAna1.refGene.LENGTH0.0060.0010.008
ornAna1.xenoRefGene.LENGTH0.7450.0090.758
oryLat2.ensGene.LENGTH0.1040.0010.105
oryLat2.geneSymbol.LENGTH0.0080.0000.009
oryLat2.refGene.LENGTH0.0090.0010.010
oryLat2.xenoRefGene.LENGTH0.8500.0090.862
panTro1.ensGene.LENGTH0.1460.0020.149
panTro1.geneid.LENGTH0.0800.0020.082
panTro1.genscan.LENGTH0.0840.0020.085
panTro1.xenoRefGene.LENGTH0.1760.0040.179
panTro2.ensGene.LENGTH0.4080.0060.415
panTro2.geneSymbol.LENGTH0.1630.0020.167
panTro2.genscan.LENGTH0.0960.0020.099
panTro2.nscanGene.LENGTH0.0970.0020.099
panTro2.refGene.LENGTH0.1600.0040.164
panTro2.xenoRefGene.LENGTH0.8770.0080.886
petMar1.xenoRefGene.LENGTH0.5810.0050.587
ponAbe2.ensGene.LENGTH0.1190.0020.121
ponAbe2.geneSymbol.LENGTH0.0200.0010.021
ponAbe2.genscan.LENGTH0.0920.0010.093
ponAbe2.nscanGene.LENGTH0.0930.0010.094
ponAbe2.refGene.LENGTH0.0190.0010.019
ponAbe2.xenoRefGene.LENGTH1.2910.0131.304
priPac1.xenoRefGene.LENGTH1.3250.0081.335
rheMac2.ensGene.LENGTH0.1830.0020.186
rheMac2.geneSymbol.LENGTH0.0100.0010.011
rheMac2.geneid.LENGTH0.0990.0020.101
rheMac2.nscanGene.LENGTH0.0830.0020.085
rheMac2.refGene.LENGTH0.0110.0010.011
rheMac2.sgpGene.LENGTH0.0980.0010.099
rheMac2.xenoRefGene.LENGTH0.7310.0090.744
rn3.ensGene.LENGTH0.3080.0040.313
rn3.geneSymbol.LENGTH0.0760.0020.078
rn3.geneid.LENGTH0.0790.0020.081
rn3.genscan.LENGTH0.0850.0010.087
rn3.knownGene.LENGTH0.0330.0010.035
rn3.nscanGene.LENGTH0.0870.0020.090
rn3.refGene.LENGTH0.0760.0030.079
rn3.sgpGene.LENGTH0.0920.0030.096
rn3.xenoRefGene.LENGTH1.0280.0101.042
rn4.ensGene.LENGTH0.1950.0060.201
rn4.geneSymbol.LENGTH0.0710.0020.074
rn4.geneid.LENGTH0.3900.0030.401
rn4.genscan.LENGTH0.0870.0020.089
rn4.knownGene.LENGTH0.0370.0010.038
rn4.nscanGene.LENGTH0.0810.0020.084
rn4.refGene.LENGTH0.0670.0010.068
rn4.sgpGene.LENGTH0.1140.0020.116
rn4.xenoRefGene.LENGTH1.3890.0091.407
sacCer1.ensGene.LENGTH0.0290.0010.032
sacCer2.ensGene.LENGTH0.0260.0010.028
strPur1.geneSymbol.LENGTH0.0090.0010.010
strPur1.genscan.LENGTH0.0910.0040.096
strPur1.refGene.LENGTH0.0090.0010.010
strPur1.xenoRefGene.LENGTH0.7050.0100.718
strPur2.geneSymbol.LENGTH0.0080.0010.010
strPur2.genscan.LENGTH0.1380.0020.142
strPur2.refGene.LENGTH0.0090.0010.009
strPur2.xenoRefGene.LENGTH0.9830.0080.996
supportedGeneIDs0.0230.0020.025
supportedGenomes0.1270.0080.240
taeGut1.ensGene.LENGTH0.0730.0010.075
taeGut1.geneSymbol.LENGTH0.0060.0000.007
taeGut1.genscan.LENGTH0.0450.0010.047
taeGut1.nscanGene.LENGTH0.0370.0010.039
taeGut1.refGene.LENGTH0.0060.0010.008
taeGut1.xenoRefGene.LENGTH0.7150.0060.723
tetNig1.ensGene.LENGTH0.1240.0020.127
tetNig1.geneid.LENGTH0.2600.0040.266
tetNig1.genscan.LENGTH0.0800.0040.084
tetNig1.nscanGene.LENGTH0.1040.0050.111
tetNig2.ensGene.LENGTH0.1040.0050.113
unfactor0.0100.0020.011
xenTro1.genscan.LENGTH0.1220.0050.136
xenTro2.ensGene.LENGTH0.1070.0040.112
xenTro2.geneSymbol.LENGTH0.0430.0040.046
xenTro2.genscan.LENGTH0.0940.0050.098
xenTro2.refGene.LENGTH0.0400.0030.044