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BioC experimental data: CHECK report for ITALICSData on zin1

This page was generated on 2015-04-08 17:40:37 -0700 (Wed, 08 Apr 2015).

Package 122/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ITALICSData 2.3.1
Guillem Rigaill
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/ITALICSData
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: ITALICSData
Version: 2.3.1
Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings ITALICSData_2.3.1.tar.gz
StartedAt: 2015-04-08 08:34:36 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 08:34:57 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 20.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: ITALICSData.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings ITALICSData_2.3.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.0-data-experiment/meat/ITALICSData.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ITALICSData/DESCRIPTION’ ... OK
* this is package ‘ITALICSData’ version ‘2.3.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ITALICSData’ can be installed ... [1s/3s] OK
* checking installed package size ... NOTE
  installed size is 182.5Mb
  sub-directories of 1Mb or more:
    extdata  181.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: Hind.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Hind.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Hind.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Hind.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Nsp.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Nsp.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Nsp.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Nsp.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Sty.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Sty.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Sty.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Sty.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Xba.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Xba.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Xba.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Xba.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: quartetInfo.Rd:12-14: Dropping empty section \format
prepare_Rd: quartetInfo.Rd:15-17: Dropping empty section \source
prepare_Rd: quartetInfo.Rd:18-19: Dropping empty section \references
prepare_Rd: snpInfo.Rd:12-14: Dropping empty section \format
prepare_Rd: snpInfo.Rd:16-18: Dropping empty section \source
prepare_Rd: snpInfo.Rd:19-20: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  quartetInfo.RData    727Kb    517Kb       xz
  snpInfo.RData         68Kb     56Kb       xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-3.0-data-experiment/meat/ITALICSData.Rcheck/00check.log’
for details.

ITALICSData.Rcheck/00install.out:

* installing *source* package ‘ITALICSData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ITALICSData)