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BioC experimental data: CHECK report for GSBenchMark on perceval

This page was generated on 2015-04-08 17:41:43 -0700 (Wed, 08 Apr 2015).

Package 94/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSBenchMark 1.0.0
Bahman Afsari
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/GSBenchMark
Last Changed Rev: 3139 / Revision: 3266
Last Changed Date: 2014-12-01 21:33:32 -0800 (Mon, 01 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: GSBenchMark
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GSBenchMark_1.0.0.tar.gz
StartedAt: 2015-04-08 09:56:39 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 09:57:38 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 58.5 seconds
RetCode: 0
Status:  OK 
CheckDir: GSBenchMark.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GSBenchMark_1.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/GSBenchMark.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... [2s/3s] OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.

GSBenchMark.Rcheck/00install.out:

* installing *source* package ‘GSBenchMark’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSBenchMark)

GSBenchMark.Rcheck/GSBenchMark-Ex.timings:

nameusersystemelapsed
GSBenchMarkDatasets0.4530.0460.919
bipolar_GDS21900.3500.0190.653
breast_GDS8070.3650.0230.720
diracpathways0.0130.0020.024
exprsdata0.6060.0601.242
leukemia_GSEA0.3290.0300.684
logexprsdata0.5350.0300.979
marfan_GDS29600.2150.0300.413
melanoma_GDS27350.4560.0300.802
parkinsons_GDS25190.8120.0931.549
phenotypes0.5200.0440.949
prostate_GDS2545_m_nf0.2460.0250.381
prostate_GDS2545_m_p0.5550.0421.112
prostate_GDS2545_p_nf0.5180.0491.061
sarcoma_data0.8630.1331.782
squamous_GDS25200.3440.0570.469