BioC experimental data: CHECK report for GSBenchMark on moscato1

Package: GSBenchMark

Version: 1.0.0

Command: rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_1.0.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_1.0.0.tar.gz

StartedAt: 2015-04-08 10:26:10 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 10:28:14 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 123.3 seconds

RetCode: 0

Status:  OK

CheckDir: GSBenchMark.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_1.0.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_1.0.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/GSBenchMark.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSBenchMark/DESCRIPTION' ... OK
* this is package 'GSBenchMark' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSBenchMark' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-data-experiment/meat/GSBenchMark.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GSBenchMark' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSBenchMark' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSBenchMark' as GSBenchMark_1.0.0.zip
* DONE (GSBenchMark)

name	user	system	elapsed
GSBenchMarkDatasets	0.38	0.00	0.37
bipolar_GDS2190	0.34	0.00	0.34
breast_GDS807	0.34	0.00	0.35
diracpathways	0.03	0.00	0.03
exprsdata	0.52	0.04	0.56
leukemia_GSEA	0.34	0.00	0.34
logexprsdata	0.52	0.02	0.53
marfan_GDS2960	0.20	0.00	0.21
melanoma_GDS2735	0.44	0.04	0.48
parkinsons_GDS2519	0.76	0.04	0.80
phenotypes	0.50	0.04	0.54
prostate_GDS2545_m_nf	0.28	0.00	1.13
prostate_GDS2545_m_p	0.56	0.02	0.57
prostate_GDS2545_p_nf	0.47	0.04	0.52
sarcoma_data	0.87	0.05	0.92
squamous_GDS2520	0.35	0.03	0.37

name	user	system	elapsed
GSBenchMarkDatasets	0.36	0.00	0.36
bipolar_GDS2190	0.33	0.00	0.33
breast_GDS807	0.26	0.03	0.29
diracpathways	0.02	0.01	0.03
exprsdata	0.45	0.03	0.49
leukemia_GSEA	0.33	0.02	0.34
logexprsdata	0.47	0.02	0.48
marfan_GDS2960	0.19	0.00	0.19
melanoma_GDS2735	0.39	0.03	0.42
parkinsons_GDS2519	0.67	0.06	0.74
phenotypes	0.43	0.01	0.45
prostate_GDS2545_m_nf	0.23	0.02	0.25
prostate_GDS2545_m_p	0.52	0.00	0.52
prostate_GDS2545_p_nf	0.47	0.02	0.48
sarcoma_data	0.76	0.04	0.81
squamous_GDS2520	0.28	0.03	0.31