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BioC experimental data: CHECK report for ConnectivityMap on moscato1

This page was generated on 2015-04-08 17:41:10 -0700 (Wed, 08 Apr 2015).

Package 46/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ConnectivityMap 1.1.1
Paul Shannon
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/ConnectivityMap
Last Changed Rev: 3075 / Revision: 3266
Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: ConnectivityMap
Version: 1.1.1
Command: rm -rf ConnectivityMap.buildbin-libdir ConnectivityMap.Rcheck && mkdir ConnectivityMap.buildbin-libdir ConnectivityMap.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ConnectivityMap.buildbin-libdir ConnectivityMap_1.1.1.tar.gz >ConnectivityMap.Rcheck\00install.out 2>&1 && cp ConnectivityMap.Rcheck\00install.out ConnectivityMap-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=ConnectivityMap.buildbin-libdir --install="check:ConnectivityMap-install.out" --force-multiarch --no-vignettes --timings ConnectivityMap_1.1.1.tar.gz
StartedAt: 2015-04-08 09:35:46 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 09:43:42 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 475.7 seconds
RetCode: 0
Status:  OK  
CheckDir: ConnectivityMap.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf ConnectivityMap.buildbin-libdir ConnectivityMap.Rcheck && mkdir ConnectivityMap.buildbin-libdir ConnectivityMap.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ConnectivityMap.buildbin-libdir ConnectivityMap_1.1.1.tar.gz >ConnectivityMap.Rcheck\00install.out 2>&1 && cp ConnectivityMap.Rcheck\00install.out ConnectivityMap-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=ConnectivityMap.buildbin-libdir --install="check:ConnectivityMap-install.out" --force-multiarch --no-vignettes --timings ConnectivityMap_1.1.1.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/ConnectivityMap.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ConnectivityMap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ConnectivityMap' version '1.1.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ConnectivityMap' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 236.8Mb
  sub-directories of 1Mb or more:
    data  236.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [36s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
ConnectivityMap   35    0.3   35.32
** running examples for arch 'x64' ... [39s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
ConnectivityMap 38.25   0.28   38.53
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [78s]
 [78s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [75s]
 [75s] OK
* checking PDF version of manual ... OK
* DONE

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-data-experiment/meat/ConnectivityMap.Rcheck/00check.log'
for details.

ConnectivityMap.Rcheck/00install.out:


install for i386

* installing *source* package 'ConnectivityMap' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'ConnectivityMap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ConnectivityMap' as ConnectivityMap_1.1.1.zip
* DONE (ConnectivityMap)

ConnectivityMap.Rcheck/examples_i386/ConnectivityMap-Ex.timings:

nameusersystemelapsed
ConnectivityMap35.00 0.3035.32

ConnectivityMap.Rcheck/examples_x64/ConnectivityMap-Ex.timings:

nameusersystemelapsed
ConnectivityMap38.25 0.2838.53