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BioC 3.0: BUILD BIN report for maanova on perceval

This page was generated on 2015-04-10 09:52:43 -0700 (Fri, 10 Apr 2015).

Package 497/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maanova 1.36.0
Keith Sheppard
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/maanova
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: maanova
Version: 1.36.0
Command: rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maanova_1.36.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maanova.buildbin-libdir
StartedAt: 2015-04-10 08:22:38 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 08:22:46 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 8.7 seconds
RetCode: 0
Status:  OK 
PackageFile: maanova_1.36.0.tgz
PackageFileSize: 1.061 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maanova_1.36.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maanova.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=maanova.buildbin-libdir maanova_1.36.0.tar.gz'
>>>>>>> 

* installing *source* package ‘maanova’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c makeratio.c -o makeratio.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment
masvd.c:154:1: warning: "/*" within comment
masvd.c:161:5: warning: "/*" within comment
masvd.c:165:2: warning: "/*" within comment
masvd.c:189:2: warning: "/*" within comment
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c shift.c -o shift.o
shift.c: In function ‘shift’:
shift.c:27: warning: unused variable ‘k’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c util.c -o util.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o maanova.so makeratio.o masvd.o shift.o util.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/maanova.buildbin-libdir/maanova/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maanova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR maanova.buildbin-libdir/maanova/libs//maanova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"