Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.0: CHECK report for flowcatchR on perceval

This page was generated on 2015-04-10 10:00:32 -0700 (Fri, 10 Apr 2015).

Package 300/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowcatchR 1.0.3
Federico Marini
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/flowcatchR
Last Changed Rev: 99005 / Revision: 102249
Last Changed Date: 2015-02-03 09:39:48 -0800 (Tue, 03 Feb 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: flowcatchR
Version: 1.0.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowcatchR_1.0.3.tar.gz
StartedAt: 2015-04-10 01:24:22 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 01:26:29 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 126.5 seconds
RetCode: 0
Status:  OK 
CheckDir: flowcatchR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowcatchR_1.0.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/flowcatchR.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowcatchR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowcatchR’ version ‘1.0.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowcatchR’ can be installed ... [7s/9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘shiny’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [39s/39s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
normalizeFrames 7.806  3.562  11.409
select.Frames   4.290  3.418   7.865
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-3.0-bioc/meat/flowcatchR.Rcheck/00check.log’
for details.

flowcatchR.Rcheck/00install.out:

* installing *source* package ‘flowcatchR’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
* DONE (flowcatchR)

flowcatchR.Rcheck/flowcatchR-Ex.timings:

nameusersystemelapsed
Frames1.7560.2852.043
add.contours0.1600.0170.177
channel.Frames0.7910.1590.951
crop.Frames1.0510.1811.231
export.Frames0.1610.0160.177
export.particles0.0210.0150.036
inspect.Frames0.1620.0170.179
kinematics0.6060.0570.662
length.Frames0.1600.0170.178
link.particles0.3440.0230.367
matchTrajToParticles0.4970.0170.514
normalizeFrames 7.806 3.56211.409
particles0.2520.1240.376
penaltyFunctionGenerator0.0010.0000.001
plot.TrajectorySet0.6370.0320.670
plot2D.TrajectorySet0.6940.0400.741
preprocess.Frames1.8400.5602.415
read.Frames0.0010.0000.001
read.particles0.0000.0000.001
rotate.Frames1.9260.6312.608
select.Frames4.2903.4187.865
select.particles0.0600.0040.065
shinyFlow000
show-Frames-method0.2010.1040.305
show-KinematicsFeatures-method0.4620.0370.500
show-KinematicsFeaturesSet-method0.5670.0220.590
show-LinkedParticleSet-method0.3990.0190.419
show-ParticleSet-method0.0260.0150.041
show-TrajectorySet-method0.4890.0310.521
snap0.0010.0000.000
trajectories0.4680.0170.486