NuPoP 1.16.0
Ji-Ping Wang
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/NuPoP | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | [ OK ] |
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### Running command:
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### rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NuPoP.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NuPoP.buildbin-libdir NuPoP_1.16.0.tar.gz'
>>>>>>>
* installing *source* package ‘NuPoP’ ...
** libs
gfortran-4.8 -fno-common -Wall -g -O2 -c vtbfb.f90 -o vtbfb.o
vtbfb.f90:13.32:
character*80 seqName,out1,out2; character*2 tpc
1
Warning: Unused variable 'out2' declared at (1)
vtbfb.f90: In function ‘vtbfb’:
vtbfb.f90:224:0: warning: ‘tp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
tp=tranL(w(t-d+1),w(t-d+2))*tranL(c(z-t+d-1),c(z-t+d))/r(t-d+1)*tp
^
gfortran-4.8 -fno-common -Wall -g -O2 -c vtbfbNL4.f90 -o vtbfbNL4.o
vtbfbNL4.f90:257.106:
L2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/r(t-d+2)
1
Warning: Nonconforming tab character at (1)
vtbfbNL4.f90:272.13:
end if
1
Warning: Nonconforming tab character at (1)
vtbfbNL4.f90:301.107:
2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/ra(t-d+2)
1
Warning: Nonconforming tab character at (1)
vtbfbNL4.f90:314.23:
tempL=tempL+temp
1
Warning: Nonconforming tab character at (1)
vtbfbNL4.f90:335.87:
3) rb(t)=rb(t)*tranL2(w(t+1),w(t+2),w(t+3))*tranL2(c(1),c(2),c(3))/rb(t+2)
1
Warning: Nonconforming tab character at (1)
vtbfbNL4.f90:364.105:
nL2(w(t+1),w(t+2),w(t+3))*tranL2(c(z-t-d+1),c(z-t-d+2),c(z-t-d+3))/rb(t+2)
1
Warning: Nonconforming tab character at (1)
vtbfbNL4.f90:15.32:
character*80 seqName,out1,out2; character*2 tpc
1
Warning: Unused variable 'out2' declared at (1)
gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NuPoP.so vtbfb.o vtbfbNL4.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/NuPoP.buildbin-libdir/NuPoP/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (NuPoP)
>>>>>>>
>>>>>>> FIXING LINKS FOR NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"