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BioC 3.0: BUILD report for Gviz on oaxaca

This page was generated on 2015-04-10 10:05:47 -0700 (Fri, 10 Apr 2015).

Package 413/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Gviz 1.10.11
Florian Hahne
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/Gviz
Last Changed Rev: 101202 / Revision: 102249
Last Changed Date: 2015-03-26 02:48:19 -0700 (Thu, 26 Mar 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: Gviz
Version: 1.10.11
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Gviz
StartedAt: 2015-04-09 19:08:54 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 19:09:52 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 58.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Gviz
###
##############################################################################
##############################################################################


* checking for file ‘Gviz/DESCRIPTION’ ... OK
* preparing ‘Gviz’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: grid
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap, parApply,
    parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, as.vector, cbind, colnames,
    do.call, duplicated, eval, evalq, get, intersect,
    is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rep.int, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unlist, unsplit

Loading required package: S4Vectors
Loading required package: stats4
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges

Error: processing vignette 'Gviz.Rnw' failed with diagnostics:
 chunk 9 (label = doIdeogramTrack) 
Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
Execution halted