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BioC 3.0: INSTALL report for DESeq2 on moscato1

This page was generated on 2015-04-10 09:48:39 -0700 (Fri, 10 Apr 2015).

Package 238/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq2 1.6.3
Michael Love
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/DESeq2
Last Changed Rev: 97702 / Revision: 102249
Last Changed Date: 2014-12-16 12:26:29 -0800 (Tue, 16 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: DESeq2
Version: 1.6.3
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/DESeq2_1.6.3.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DESeq2_1.6.3.tar.gz && rm DESeq2_1.6.3.tar.gz
StartedAt: 2015-04-09 18:19:16 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 18:21:33 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 137.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/DESeq2_1.6.3.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DESeq2_1.6.3.tar.gz && rm DESeq2_1.6.3.tar.gz
###
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100  672k  100  672k    0     0  27.5M      0 --:--:-- --:--:-- --:--:-- 36.4M

install for i386

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'DESeq2' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c DESeq2.cpp -o DESeq2.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lRlapack -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/DESeq2/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'DESeq2' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c DESeq2.cpp -o DESeq2.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lRlapack -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/DESeq2/libs/x64
** testing if installed package can be loaded
* DONE (DESeq2)