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BioC 3.0: INSTALL report for CellNOptR on moscato1

This page was generated on 2015-04-10 09:47:33 -0700 (Fri, 10 Apr 2015).

Package 132/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellNOptR 1.12.0
T.Cokelaer
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/CellNOptR
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: CellNOptR
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/CellNOptR_1.12.0.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch CellNOptR_1.12.0.tar.gz && rm CellNOptR_1.12.0.tar.gz
StartedAt: 2015-04-09 18:12:30 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 18:14:06 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 95.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/CellNOptR_1.12.0.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch CellNOptR_1.12.0.tar.gz && rm CellNOptR_1.12.0.tar.gz
###
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100 1414k  100 1414k    0     0  65.6M      0 --:--:-- --:--:-- --:--:--  106M

install for i386

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'CellNOptR' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -I./include    -O3 -Wall  -std=gnu99 -mtune=core2 -c getFit.c -o getFit.o
getFit.c: In function 'getFit':
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -I./include    -O3 -Wall  -std=gnu99 -mtune=core2 -c simulatorT1.c -o simulatorT1.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -I./include    -O3 -Wall  -std=gnu99 -mtune=core2 -c simulatorTN.c -o simulatorTN.o
gcc -m32 -shared -s -static-libgcc -o CellNOptR.dll tmp.def getFit.o simulatorT1.o simulatorTN.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/CellNOptR/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'CellNOptR' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -I./include    -O2 -Wall  -std=gnu99 -mtune=core2 -c getFit.c -o getFit.o
getFit.c: In function 'getFit':
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -I./include    -O2 -Wall  -std=gnu99 -mtune=core2 -c simulatorT1.c -o simulatorT1.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -I./include    -O2 -Wall  -std=gnu99 -mtune=core2 -c simulatorTN.c -o simulatorTN.o
gcc -m64 -shared -s -static-libgcc -o CellNOptR.dll tmp.def getFit.o simulatorT1.o simulatorTN.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/CellNOptR/libs/x64
** testing if installed package can be loaded
* DONE (CellNOptR)