Package: ind1KG

Version: 0.1.12

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings ind1KG_0.1.12.tar.gz

StartedAt: 2012-03-23 13:41:42 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 13:44:54 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 192.1 seconds

RetCode: 0

Status:  OK

CheckDir: ind1KG.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-data-experiment/meat/ind1KG.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ind1KG/DESCRIPTION’ ... OK
* this is package ‘ind1KG’ version ‘0.1.12’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘ind1KG’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 181.4Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘ind1KG’ ...
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘ind1KG.Rnw’ 
   ‘nov09rv.Rnw’ 
** testing if installed package can be loaded

* DONE (ind1KG)

name	user	system	elapsed
c6snp	15.193	0.220	15.421
gw6c6.snp240	0.268	0.016	0.286
n240	21.205	0.584	21.835
oregdf	0.004	0.000	0.005
pup240_500k	2.280	0.184	3.245
pup240_disc	0.064	0.004	0.071
rsgdf	0.008	0.000	0.007
yri240_6	0.472	0.012	0.483