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ind1KG 0.1.12
VJ Carey
Snapshot Date: 2012-03-23 11:15:09 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ind1KG
Last Changed Rev: 1970 / Revision: 2028
Last Changed Date: 2012-03-08 17:20:26 -0800 (Thu, 08 Mar 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: ind1KG
Version: 0.1.12
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ind1KG_0.1.12.tar.gz
StartedAt: 2012-03-23 14:06:33 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 14:11:26 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 293.8 seconds
RetCode: 0
Status:  OK 
CheckDir: ind1KG.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/ind1KG.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* this is package 'ind1KG' version '0.1.12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ind1KG' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 181.4Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ind1KG.Rcheck/00install.out:

* installing *source* package 'ind1KG' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ind1KG.Rnw' 
   'nov09rv.Rnw' 
** testing if installed package can be loaded

* DONE (ind1KG)

ind1KG.Rcheck/ind1KG-Ex.timings:

nameusersystemelapsed
c6snp17.728 0.50418.561
gw6c6.snp2400.3060.0190.326
n24037.098 1.08138.677
oregdf0.0070.0010.008
pup240_500k3.7050.1323.859
pup240_disc0.1470.0050.152
rsgdf0.0100.0010.011
yri240_61.0020.0241.043