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hgu2beta7 1.2.5
Bioconductor Package Maintainer
Snapshot Date: 2012-03-23 11:15:09 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 1836 / Revision: 2028
Last Changed Date: 2011-11-14 17:11:10 -0800 (Mon, 14 Nov 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: hgu2beta7
Version: 1.2.5
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hgu2beta7_1.2.5.tar.gz
StartedAt: 2012-03-23 14:05:11 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 14:06:31 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 80.0 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hgu2beta7.Rcheck
Warnings: 2

Command output

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.2.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: 'annotate'
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'Rdata.rdb' 'Rdata.rds' 'Rdata.rdx'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.9-data-experiment/meat/hgu2beta7.Rcheck/00check.log'
for details

hgu2beta7.Rcheck/00install.out:

* installing *source* package 'hgu2beta7' ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.5850.0460.733
hgu2beta7CHR0.2110.0090.227
hgu2beta7CHRLENGTHS0.0000.0010.000
hgu2beta7CHRLOC0.4120.0120.447
hgu2beta7ENZYME0.2080.0090.218
hgu2beta7ENZYME2PROBE0.0070.0010.007
hgu2beta7GENENAME0.3560.0100.373
hgu2beta7GO2.5650.0952.776
hgu2beta7GO2ALLPROBES0.7320.0510.809
hgu2beta7GO2PROBE0.1260.0140.148
hgu2beta7GRIF0.1880.0100.200
hgu2beta7LOCUSID0.2090.0150.226
hgu2beta7MAP0.1790.0080.194
hgu2beta7OMIM0.1760.0070.188
hgu2beta7ORGANISM0.0000.0010.001
hgu2beta7PATH0.2060.0080.219
hgu2beta7PATH2PROBE0.0060.0010.007
hgu2beta7PMID0.4360.0160.460
hgu2beta7PMID2PROBE1.7530.0481.854
hgu2beta7REFSEQ0.7540.0150.778
hgu2beta7SUMFUNC0.3910.0240.417
hgu2beta7SYMBOL0.6800.0060.691
hgu2beta7UNIGENE0.3250.0090.334