Package: RNAinteractMAPK

Version: 1.0.3

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings RNAinteractMAPK_1.0.3.tar.gz

StartedAt: 2012-03-23 14:02:17 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 14:06:08 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 230.8 seconds

RetCode: 0

Status:  OK

CheckDir: RNAinteractMAPK.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-data-experiment/meat/RNAinteractMAPK.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RNAinteractMAPK/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RNAinteractMAPK’ version ‘1.0.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘RNAinteractMAPK’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.5Mb
  sub-directories of 1Mb or more:
    data      7.9Mb
    extdata   3.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                           old_size new_size compress
  Dmel2PPMAPK.rda             7.8Mb    6.6Mb       xz
  dsRNAiDilutionSeries.rda     59Kb     52Kb       xz
  singleKDphenotype.rda        21Kb     16Kb       xz
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘RNAinteractMAPK’ ...
** R
** data
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class “connection” in package ‘graph’ seems equivalent to one from package ‘IRanges’ and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class “file” in package ‘graph’ seems equivalent to one from package ‘IRanges’ and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘RNAinteractMAPK.Rnw’ 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (RNAinteractMAPK)

name	user	system	elapsed
Dmel2PPMAPK	2.964	0.036	3.000
ElpB1phenotype	0.004	0.000	0.006
Networks	0.008	0.000	0.005
PhysicalInteractions	0.004	0.000	0.004
RNAinteractMAPK-package	1.352	0.024	1.382
cellTiterGlo	0.004	0.000	0.005
dsRNAiDilutionSeriesData	0.024	0.032	0.055
mRNAdoubleKDefficiency	0.008	0.000	0.005
mRNAsingleKDefficiency	0.004	0.000	0.005
pathwayMembership	0.004	0.000	0.002
singleKDphenotype	0.008	0.000	0.007