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RNAinteractMAPK 1.0.3
Bernd Fischer
Snapshot Date: 2012-03-23 11:15:09 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RNAinteractMAPK
Last Changed Rev: 1875 / Revision: 2028
Last Changed Date: 2012-01-05 00:51:17 -0800 (Thu, 05 Jan 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: RNAinteractMAPK
Version: 1.0.3
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RNAinteractMAPK_1.0.3.tar.gz
StartedAt: 2012-03-23 14:25:08 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 14:30:30 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 322.1 seconds
RetCode: 0
Status:  OK 
CheckDir: RNAinteractMAPK.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/RNAinteractMAPK.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RNAinteractMAPK/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RNAinteractMAPK' version '1.0.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RNAinteractMAPK' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.5Mb
  sub-directories of 1Mb or more:
    data      7.9Mb
    extdata   3.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                           old_size new_size compress
  Dmel2PPMAPK.rda             7.8Mb    6.6Mb       xz
  dsRNAiDilutionSeries.rda     59Kb     52Kb       xz
  singleKDphenotype.rda        21Kb     16Kb       xz
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

RNAinteractMAPK.Rcheck/00install.out:

* installing *source* package 'RNAinteractMAPK' ...
** R
** data
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "file" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RNAinteractMAPK.Rnw' 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (RNAinteractMAPK)

RNAinteractMAPK.Rcheck/RNAinteractMAPK-Ex.timings:

nameusersystemelapsed
Dmel2PPMAPK3.3430.1123.531
ElpB1phenotype0.0090.0020.010
Networks0.0060.0010.008
PhysicalInteractions0.0050.0010.006
RNAinteractMAPK-package1.8540.1051.980
cellTiterGlo0.0080.0020.010
dsRNAiDilutionSeriesData0.0590.0720.155
mRNAdoubleKDefficiency0.0080.0020.010
mRNAsingleKDefficiency0.0060.0010.009
pathwayMembership0.0030.0010.004
singleKDphenotype0.0110.0030.014