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Package 351/514HostnameOS / ArchBUILDCHECKBUILD BIN
ontoCAT 1.6.0
Natalja Kurbatova
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/ontoCAT
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: ontoCAT
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ontoCAT_1.6.0.tar.gz
StartedAt: 2012-03-24 02:57:09 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 03:16:53 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 1183.6 seconds
RetCode: 0
Status:  OK 
CheckDir: ontoCAT.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/ontoCAT.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ontoCAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ontoCAT' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ontoCAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ontoCAT.Rcheck/00install.out:

* installing *source* package 'ontoCAT' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ontoCAT.Rnw' 
** testing if installed package can be loaded

* DONE (ontoCAT)

ontoCAT.Rcheck/ontoCAT-Ex.timings:

nameusersystemelapsed
Ontology-class39.790 0.64961.587
OntologyTerm-class0.0210.0000.022
getAccession0.0170.0010.017
getAllTermChildren5.8390.0535.938
getAllTermIds22.846 0.10623.104
getAllTermParents0.0980.0010.100
getAllTerms42.955 0.37444.084
getEFO20.656 0.09120.942
getEFOBranchRootIds8.9040.0249.005
getLabel0.0130.0000.014
getOntology95.287 0.57696.762
getOntologyAccession0.0050.0000.006
getOntologyDescription0.0050.0000.006
getOntologyNoReasoning117.052 0.659120.615
getOntologyRelationNames141.123 0.625144.606
getRootIds7.1830.0257.461
getRoots7.2240.0257.499
getTermAndAllChildren5.6050.0485.730
getTermById0.0170.0000.018
getTermChildren0.2260.0030.229
getTermDefinitions0.0330.0000.034
getTermNameById0.0100.0010.010
getTermParents0.0500.0010.050
getTermRelationNames151.750 0.695154.357
getTermRelations150.011 0.705152.654
getTermSynonyms0.0760.0010.079
hasTerm0.0080.0000.008
isEFOBranchRoot0.0150.0000.017
isRoot7.2040.0237.342
ontoCAT-package0.0030.0000.003
searchTerm5.9070.0225.972
searchTermPrefix6.2980.0286.431
showHierarchyDownToTerm122.815 0.440125.913
showPathsToTerm114.805 0.438119.894