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Package 331/514HostnameOS / ArchBUILDCHECKBUILD BIN
multtest 2.10.0
Katherine S. Pollard
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/multtest
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: multtest
Version: 2.10.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings multtest_2.10.0.tar.gz
StartedAt: 2012-03-24 01:39:21 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:40:22 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 61.6 seconds
RetCode: 0
Status:  OK 
CheckDir: multtest.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/multtest.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘multtest/DESCRIPTION’ ... OK
* this is package ‘multtest’ version ‘2.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘multtest’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
              old_size new_size compress
  golub.RData    441Kb    297Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/multtest.Rcheck/multtest/libs/multtest.so’:
  Found ‘__assert_fail’, possibly from ‘assert’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.  The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... OK
* checking PDF version of manual ... OK

multtest.Rcheck/00install.out:

* installing *source* package ‘multtest’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c Rpack.c -o Rpack.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c VScount.c -o VScount.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c bootloop.c -o bootloop.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c mt.c -o mt.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c pairt_sampling.c -o pairt_sampling.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c random.c -o random.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c sampling.c -o sampling.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c sampling_fixed.c -o sampling_fixed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c stat_func.c -o stat_func.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c stat_order.c -o stat_order.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/multtest.Rcheck/multtest/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘as.list’ from package ‘base’ in package ‘multtest’
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (multtest)

multtest.Rcheck/multtest-Ex.timings:

nameusersystemelapsed
EBMTP-class000
EBMTP0.2880.0080.298
Hsets0.2440.0000.242
MTP-class000
MTP0.4040.0000.402
boot.null0.0960.0080.105
corr.null0.1120.0040.117
fwer2gfwer3.5240.0043.558
get.index0.9600.0041.070
meanX0.0080.0000.007
mt.maxT4.8000.0244.894
mt.plot0.3320.0080.343
mt.rawp2adjp0.3040.0040.308
mt.reject0.3000.0040.302
mt.sample.teststat0.0560.0040.061
mt.teststat0.5120.0040.517
ss.maxT000
wapply0.0000.0000.001