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Package 294/514HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.18.0
Gustavo H. Esteves
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/maigesPack
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: maigesPack
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch maigesPack_1.18.0.tar.gz
StartedAt: 2012-03-24 02:15:55 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 02:29:04 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 789.8 seconds
RetCode: 0
Status:  OK 
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/maigesPack.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'maigesPack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
               old_size new_size compress
  gastro.RData    836Kb    459Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package 'maigesPack' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c Minfo.c -o Minfo.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c bootstrapT.c -o bootstrapT.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c register.c -o register.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c robustCorr.c -o robustCorr.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c stats.c -o stats.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o maigesPack.so Minfo.o bootstrapT.o register.o robustCorr.o stats.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/maigesPack.Rcheck/maigesPack/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'maigesPack_tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI0.0050.0000.006
activeMod4.1650.0464.256
activeModScoreHTML2.1590.0392.258
activeNet6.8550.0497.110
activeNetScoreHTML6.7790.0316.943
addGeneGrps0.0000.0000.001
addPaths000
bootstrapCor0.0810.0020.084
bootstrapMI0.3320.0030.336
bootstrapT0.0050.0010.006
boxplot-methods154.039 47.594211.000
bracketMethods0.4090.0520.463
calcA0.3630.2350.602
calcW0.3590.2300.590
classifyKNN0.4450.0210.488
classifyKNNsc0.6050.0140.621
classifyLDA1.9250.0221.952
classifyLDAsc3.0210.0233.056
classifySVM0.9460.0200.982
classifySVMsc1.5520.0191.612
coerce-methods0.2710.0720.350
compCorr0.0010.0000.001
createMaigesRaw0.5980.0230.634
deGenes2by2BootT1.1150.0141.176
deGenes2by2Ttest0.4850.0150.582
deGenes2by2Wilcox0.4380.0100.456
deGenesANOVA0.5400.0360.589
designANOVA0.2420.0180.266
dim-methods0.1670.0080.176
getLabels0.1710.0150.186
hierM3.1260.2313.419
hierMde0.7440.0330.883
image-methods 6.141 3.71810.826
kmeansM3.0270.2393.308
kmeansMde0.6690.0260.698
loadData0.0000.0000.001
normLoc4.6410.4295.443
normOLIN0.1690.0100.198
normRepLoess0.1670.0060.173
normScaleLimma184.835 35.902226.105
normScaleMarray100.209 17.539123.578
plot-methods13.829 0.30214.874
plotGenePair0.2320.0190.251
print-methods0.2930.0190.314
relNet2TGF0.2870.0270.335
relNetworkB3.2670.0583.342
relNetworkM0.2190.0160.236
robustCorr0.0010.0000.002
selSpots0.5810.1530.741
show-methods0.4130.0230.439
somM3.4150.2713.724
somMde0.7770.0290.811
summarizeReplicates3.6580.2663.954
summary-methods0.4210.0250.446
tableClass1.4580.0131.479
tablesDE4.7430.0914.881