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Package 174/514HostnameOS / ArchBUILDCHECKBUILD BIN
flowStats 1.12.0
Greg Finak and Mike Jiang
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/flowStats
Last Changed Rev: 61512 / Revision: 64395
Last Changed Date: 2011-12-20 15:40:17 -0800 (Tue, 20 Dec 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: flowStats
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowStats_1.12.0.tar.gz
StartedAt: 2012-03-24 01:01:20 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:07:58 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 398.1 seconds
RetCode: 0
Status:  OK 
CheckDir: flowStats.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/flowStats.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowStats/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowStats' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'flowStats' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   2.2Mb
    doc    2.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.plotGPAprocess: no visible binding for global variable 'whichS'
.plotGPAprocess: no visible binding for global variable 'cluster'
.plotWorkFlow: no visible binding for global variable 'cluster'
.plotWorkFlow: no visible binding for global variable 'bogus'
.usingSVD: no visible binding for global variable 'params'
.usingSVD: no visible global function definition for 's.nan'
normQA: no visible binding for global variable 'group'
normQA: no visible binding for global variable 'hasPeak'
warpSet: no visible binding for global variable 'wfuns'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                 old_size new_size compress
  BackGating.rda    133Kb     93Kb       xz
  ITN.rda           2.1Mb    1.3Mb       xz
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowStats.Rcheck/00install.out:

* installing *source* package 'flowStats' ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning: replacing previous import '.__C__character' when loading 'methods'

--------

for references have a look at
citation('robCompositions')    
--------

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GettingStartedWithFlowStats.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

--------

for references have a look at
citation('robCompositions')    
--------

Warning message:
replacing previous import '.__C__character' when loading 'methods' 

* DONE (flowStats)

flowStats.Rcheck/flowStats-Ex.timings:

nameusersystemelapsed
autoGate6.9070.5637.723
binByRef3.1550.2813.480
calcPBChiSquare3.2690.2483.690
calcPearsonChi3.5850.2523.905
curvPeaks3.6380.3114.151
density1d11.192 2.73814.275
gaussNorm20.188 4.53925.044
gpaSet10.441 2.18214.319
iProcrustes0.6550.0840.890
idFeaturesByBackgating3.0790.0273.152
landmarkMatrix4.1430.5945.637
lymphGate20.855 3.86625.647
plotBins3.5030.3334.040
proBin2.7960.2493.069
quadrantGate12.161 3.50116.047
rangeGate10.057 3.14413.350
warpSet52.88726.21080.365